Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS10125

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS10115 and RS_RS10120 are separated by 30 nucleotidesRS_RS10120 and RS_RS10125 are separated by 11 nucleotidesRS_RS10125 and RS_RS10130 are separated by 36 nucleotides RS_RS10115: RS_RS10115 - 3-hydroxyacyl-CoA dehydrogenase, at 2,191,733 to 2,193,241 _RS10115 RS_RS10120: RS_RS10120 - enoyl-CoA hydratase, at 2,193,272 to 2,194,051 _RS10120 RS_RS10125: RS_RS10125 - histidine phosphatase family protein, at 2,194,063 to 2,194,797 _RS10125 RS_RS10130: RS_RS10130 - phosphotransferase family protein, at 2,194,834 to 2,195,910 _RS10130 Position (kb) 2194 2195Strain fitness (log2 ratio) -1 0 1at 2193.365 kb on + strand, within RS_RS10120at 2193.365 kb on + strand, within RS_RS10120at 2193.365 kb on + strand, within RS_RS10120at 2193.365 kb on + strand, within RS_RS10120at 2193.675 kb on - strand, within RS_RS10120at 2194.126 kb on + strandat 2194.127 kb on - strandat 2194.768 kb on + strandat 2194.768 kb on + strandat 2195.023 kb on + strand, within RS_RS10130at 2195.024 kb on - strand, within RS_RS10130at 2195.185 kb on + strand, within RS_RS10130at 2195.185 kb on + strand, within RS_RS10130at 2195.185 kb on + strand, within RS_RS10130at 2195.186 kb on - strand, within RS_RS10130at 2195.266 kb on + strand, within RS_RS10130at 2195.390 kb on - strand, within RS_RS10130at 2195.390 kb on - strand, within RS_RS10130at 2195.695 kb on + strand, within RS_RS10130at 2195.695 kb on + strand, within RS_RS10130at 2195.695 kb on + strand, within RS_RS10130at 2195.707 kb on + strand, within RS_RS10130at 2195.761 kb on + strand, within RS_RS10130

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,193,365 + RS_RS10120 0.12 -0.2
2,193,365 + RS_RS10120 0.12 +0.4
2,193,365 + RS_RS10120 0.12 -0.4
2,193,365 + RS_RS10120 0.12 -0.2
2,193,675 - RS_RS10120 0.52 -0.7
2,194,126 + +0.4
2,194,127 - -0.0
2,194,768 + +1.2
2,194,768 + -1.2
2,195,023 + RS_RS10130 0.18 +0.6
2,195,024 - RS_RS10130 0.18 +0.5
2,195,185 + RS_RS10130 0.33 -0.4
2,195,185 + RS_RS10130 0.33 -0.9
2,195,185 + RS_RS10130 0.33 +1.0
2,195,186 - RS_RS10130 0.33 -0.6
2,195,266 + RS_RS10130 0.40 +0.1
2,195,390 - RS_RS10130 0.52 +0.6
2,195,390 - RS_RS10130 0.52 +1.0
2,195,695 + RS_RS10130 0.80 -0.3
2,195,695 + RS_RS10130 0.80 -0.3
2,195,695 + RS_RS10130 0.80 -0.8
2,195,707 + RS_RS10130 0.81 +0.4
2,195,761 + RS_RS10130 0.86 +0.2

Or see this region's nucleotide sequence