Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS09275

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS09265 and RS_RS09270 are separated by 47 nucleotidesRS_RS09270 and RS_RS09275 overlap by 4 nucleotidesRS_RS09275 and RS_RS09280 are separated by 383 nucleotides RS_RS09265: RS_RS09265 - alanine-phosphoribitol ligase, at 2,008,548 to 2,009,798 _RS09265 RS_RS09270: RS_RS09270 - NAD(P)-dependent oxidoreductase, at 2,009,846 to 2,010,634 _RS09270 RS_RS09275: RS_RS09275 - hypothetical protein, at 2,010,631 to 2,010,828 _RS09275 RS_RS09280: RS_RS09280 - hypothetical protein, at 2,011,212 to 2,018,705 _RS09280 Position (kb) 2010 2011Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2009.847 kb on + strandat 2010.016 kb on - strand, within RS_RS09270at 2010.130 kb on - strand, within RS_RS09270at 2010.634 kb on + strandat 2010.635 kb on - strandat 2010.801 kb on + strand, within RS_RS09275at 2010.802 kb on - strand, within RS_RS09275at 2010.829 kb on - strandat 2011.058 kb on + strandat 2011.321 kb on - strandat 2011.511 kb on - strandat 2011.716 kb on + strandat 2011.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,009,847 + +0.5
2,010,016 - RS_RS09270 0.22 +0.3
2,010,130 - RS_RS09270 0.36 +0.7
2,010,634 + +1.9
2,010,635 - +0.4
2,010,801 + RS_RS09275 0.86 +1.9
2,010,802 - RS_RS09275 0.86 +1.9
2,010,829 - -0.3
2,011,058 + +1.9
2,011,321 - -1.1
2,011,511 - +1.1
2,011,716 + -0.2
2,011,717 - -2.8

Or see this region's nucleotide sequence