Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS08300 and RS_RS08305 are separated by 37 nucleotides RS_RS08305 and RS_RS08310 are separated by 180 nucleotides RS_RS08310 and RS_RS08315 are separated by 71 nucleotides
RS_RS08300: RS_RS08300 - two-component sensor histidine kinase, at 1,770,551 to 1,771,912
_RS08300
RS_RS08305: RS_RS08305 - two-component system response regulator OmpR, at 1,771,950 to 1,772,672
_RS08305
RS_RS08310: RS_RS08310 - hypothetical protein, at 1,772,853 to 1,773,302
_RS08310
RS_RS08315: RS_RS08315 - DUF1800 domain-containing protein, at 1,773,374 to 1,774,990
_RS08315
Position (kb)
1771
1772
1773 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1771.035 kb on + strand, within RS_RS08300 at 1771.035 kb on + strand, within RS_RS08300 at 1771.036 kb on - strand, within RS_RS08300 at 1771.464 kb on + strand, within RS_RS08300 at 1771.465 kb on - strand, within RS_RS08300 at 1771.608 kb on + strand, within RS_RS08300 at 1771.632 kb on + strand, within RS_RS08300 at 1771.866 kb on - strand at 1771.866 kb on - strand at 1772.603 kb on - strand at 1772.684 kb on + strand at 1772.745 kb on - strand at 1772.745 kb on - strand at 1772.748 kb on + strand at 1772.785 kb on - strand at 1772.785 kb on - strand at 1773.264 kb on + strand at 1773.264 kb on + strand at 1773.265 kb on - strand at 1773.281 kb on + strand at 1773.286 kb on - strand at 1773.286 kb on - strand at 1773.362 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,771,035 + RS_RS08300 0.36 +0.2 1,771,035 + RS_RS08300 0.36 +0.8 1,771,036 - RS_RS08300 0.36 +0.1 1,771,464 + RS_RS08300 0.67 -0.2 1,771,465 - RS_RS08300 0.67 +0.8 1,771,608 + RS_RS08300 0.78 -0.7 1,771,632 + RS_RS08300 0.79 +0.5 1,771,866 - +0.2 1,771,866 - -0.2 1,772,603 - -0.5 1,772,684 + -4.3 1,772,745 - -0.6 1,772,745 - +0.0 1,772,748 + +0.8 1,772,785 - +1.8 1,772,785 - +0.7 1,773,264 + +0.8 1,773,264 + +0.3 1,773,265 - -0.5 1,773,281 + -1.3 1,773,286 - -1.1 1,773,286 - +0.8 1,773,362 + +0.3
Or see this region's nucleotide sequence