Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS05920 and RS_RS05925 are separated by 158 nucleotides RS_RS05925 and RS_RS05930 are separated by 192 nucleotides RS_RS05930 and RS_RS05935 overlap by 4 nucleotides RS_RS05935 and RS_RS05940 are separated by 56 nucleotides
RS_RS05920: RS_RS05920 - glycosyltransferase family 39 protein, at 1,243,885 to 1,245,681
_RS05920
RS_RS05925: RS_RS05925 - 50S ribosomal protein L31 type B, at 1,245,840 to 1,246,103
_RS05925
RS_RS05930: RS_RS05930 - hypothetical protein, at 1,246,296 to 1,246,859
_RS05930
RS_RS05935: RS_RS05935 - membrane protein, at 1,246,856 to 1,247,722
_RS05935
RS_RS05940: RS_RS05940 - DNA-binding response regulator, at 1,247,779 to 1,248,447
_RS05940
Position (kb) 1246
1247 Strain fitness (log2 ratio) -1
0
1
2 at 1246.652 kb on - strand, within RS_RS05930 at 1246.652 kb on - strand, within RS_RS05930 at 1246.920 kb on + strand at 1246.941 kb on + strand at 1247.125 kb on - strand, within RS_RS05935 at 1247.662 kb on - strand at 1247.732 kb on - strand at 1247.823 kb on - strand at 1247.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,246,652 - RS_RS05930 0.63 +0.2 1,246,652 - RS_RS05930 0.63 -1.2 1,246,920 + -1.0 1,246,941 + +0.2 1,247,125 - RS_RS05935 0.31 -1.6 1,247,662 - +0.2 1,247,732 - -0.3 1,247,823 - +0.7 1,247,845 + +2.0
Or see this region's nucleotide sequence