Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03815 and RS_RS03820 are separated by 10 nucleotides RS_RS03820 and RS_RS03825 are separated by 49 nucleotides RS_RS03825 and RS_RS03830 are separated by 34 nucleotides RS_RS03830 and RS_RS03835 are separated by 159 nucleotides
RS_RS03815: RS_RS03815 - IclR family transcriptional regulator, at 800,954 to 801,775
_RS03815
RS_RS03820: RS_RS03820 - tryptophan 2,3-dioxygenase, at 801,786 to 802,622
_RS03820
RS_RS03825: RS_RS03825 - kynureninase, at 802,672 to 803,925
_RS03825
RS_RS03830: RS_RS03830 - kynurenine formamidase, at 803,960 to 804,589
_RS03830
RS_RS03835: RS_RS03835 - Lrp/AsnC family transcriptional regulator, at 804,749 to 805,279
_RS03835
Position (kb) 802
803
804 Strain fitness (log2 ratio) -2
-1
0
1
2 at 801.774 kb on - strand at 801.851 kb on - strand at 801.976 kb on + strand, within RS_RS03820 at 801.977 kb on - strand, within RS_RS03820 at 801.977 kb on - strand, within RS_RS03820 at 802.007 kb on - strand, within RS_RS03820 at 802.042 kb on + strand, within RS_RS03820 at 802.042 kb on + strand, within RS_RS03820 at 802.111 kb on + strand, within RS_RS03820 at 802.112 kb on - strand, within RS_RS03820 at 802.168 kb on + strand, within RS_RS03820 at 802.549 kb on + strand at 802.558 kb on + strand at 802.558 kb on + strand at 802.558 kb on + strand at 802.686 kb on + strand at 802.686 kb on + strand at 802.686 kb on + strand at 802.687 kb on - strand at 802.687 kb on - strand at 802.883 kb on + strand, within RS_RS03825 at 802.883 kb on + strand, within RS_RS03825 at 802.884 kb on - strand, within RS_RS03825 at 803.117 kb on + strand, within RS_RS03825 at 803.118 kb on - strand, within RS_RS03825 at 803.118 kb on - strand, within RS_RS03825 at 803.240 kb on + strand, within RS_RS03825 at 803.241 kb on - strand, within RS_RS03825 at 803.241 kb on - strand, within RS_RS03825 at 803.246 kb on + strand, within RS_RS03825 at 803.246 kb on + strand, within RS_RS03825 at 803.247 kb on - strand, within RS_RS03825 at 803.247 kb on - strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.378 kb on + strand, within RS_RS03825 at 803.379 kb on - strand, within RS_RS03825 at 803.397 kb on - strand, within RS_RS03825 at 803.523 kb on - strand, within RS_RS03825 at 803.523 kb on - strand, within RS_RS03825 at 803.831 kb on + strand at 803.831 kb on + strand at 804.039 kb on + strand, within RS_RS03830 at 804.258 kb on + strand, within RS_RS03830 at 804.258 kb on + strand, within RS_RS03830 at 804.367 kb on - strand, within RS_RS03830 at 804.411 kb on + strand, within RS_RS03830 at 804.581 kb on - strand at 804.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 801,774 - -0.2 801,851 - +1.1 801,976 + RS_RS03820 0.23 +1.1 801,977 - RS_RS03820 0.23 +1.0 801,977 - RS_RS03820 0.23 +1.4 802,007 - RS_RS03820 0.26 -0.9 802,042 + RS_RS03820 0.31 -0.4 802,042 + RS_RS03820 0.31 +0.1 802,111 + RS_RS03820 0.39 +0.5 802,112 - RS_RS03820 0.39 -0.9 802,168 + RS_RS03820 0.46 -0.4 802,549 + +0.3 802,558 + -1.5 802,558 + -0.5 802,558 + -0.9 802,686 + +2.1 802,686 + -0.6 802,686 + +1.1 802,687 - -1.9 802,687 - -0.6 802,883 + RS_RS03825 0.17 -0.1 802,883 + RS_RS03825 0.17 +0.3 802,884 - RS_RS03825 0.17 -0.1 803,117 + RS_RS03825 0.35 -0.2 803,118 - RS_RS03825 0.36 -0.5 803,118 - RS_RS03825 0.36 -0.3 803,240 + RS_RS03825 0.45 -0.4 803,241 - RS_RS03825 0.45 -0.3 803,241 - RS_RS03825 0.45 +0.1 803,246 + RS_RS03825 0.46 -0.0 803,246 + RS_RS03825 0.46 -0.3 803,247 - RS_RS03825 0.46 -0.4 803,247 - RS_RS03825 0.46 +2.1 803,378 + RS_RS03825 0.56 +2.1 803,378 + RS_RS03825 0.56 +0.7 803,378 + RS_RS03825 0.56 +0.1 803,378 + RS_RS03825 0.56 +0.1 803,379 - RS_RS03825 0.56 +0.3 803,397 - RS_RS03825 0.58 +0.5 803,523 - RS_RS03825 0.68 +0.4 803,523 - RS_RS03825 0.68 -0.1 803,831 + -0.9 803,831 + -0.6 804,039 + RS_RS03830 0.13 -1.1 804,258 + RS_RS03830 0.47 +1.1 804,258 + RS_RS03830 0.47 -1.0 804,367 - RS_RS03830 0.65 -0.1 804,411 + RS_RS03830 0.72 +0.1 804,581 - -0.3 804,581 - +1.0
Or see this region's nucleotide sequence