Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03470

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03465 and RS_RS03470 overlap by 8 nucleotidesRS_RS03470 and RS_RS03475 are separated by 80 nucleotides RS_RS03465: RS_RS03465 - glycosyl transferase, at 737,091 to 738,212 _RS03465 RS_RS03470: RS_RS03470 - chain-length determining protein, at 738,205 to 739,107 _RS03470 RS_RS03475: RS_RS03475 - phosphomannomutase/phosphoglucomutase, at 739,188 to 740,573 _RS03475 Position (kb) 738 739 740Strain fitness (log2 ratio) -2 -1 0 1 2at 737.625 kb on + strand, within RS_RS03465at 737.625 kb on + strand, within RS_RS03465at 737.626 kb on - strand, within RS_RS03465at 737.752 kb on - strand, within RS_RS03465at 737.753 kb on + strand, within RS_RS03465at 737.754 kb on - strand, within RS_RS03465at 737.754 kb on - strand, within RS_RS03465at 738.120 kb on + strandat 738.132 kb on + strandat 738.132 kb on + strandat 738.210 kb on + strandat 738.210 kb on + strandat 738.210 kb on + strandat 738.210 kb on + strandat 738.655 kb on + strand, within RS_RS03470at 738.951 kb on + strand, within RS_RS03470at 738.951 kb on + strand, within RS_RS03470

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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737,625 + RS_RS03465 0.48 +0.5
737,625 + RS_RS03465 0.48 +2.2
737,626 - RS_RS03465 0.48 -0.6
737,752 - RS_RS03465 0.59 +0.2
737,753 + RS_RS03465 0.59 -0.1
737,754 - RS_RS03465 0.59 -2.1
737,754 - RS_RS03465 0.59 -0.8
738,120 + -0.3
738,132 + +2.2
738,132 + +0.5
738,210 + +0.6
738,210 + +1.2
738,210 + -0.6
738,210 + +0.6
738,655 + RS_RS03470 0.50 +0.1
738,951 + RS_RS03470 0.83 +1.0
738,951 + RS_RS03470 0.83 -0.2

Or see this region's nucleotide sequence