Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01585

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS01580 and RS_RS01585 are separated by 217 nucleotidesRS_RS01585 and RS_RS01590 are separated by 56 nucleotidesRS_RS01590 and RS_RS01595 are separated by 183 nucleotides RS_RS01580: RS_RS01580 - type III secretion system YopJ family effector RipAE, at 352,525 to 354,456 _RS01580 RS_RS01585: RS_RS01585 - lipoyl synthase, at 354,674 to 355,675 _RS01585 RS_RS01590: RS_RS01590 - octanoyltransferase, at 355,732 to 356,421 _RS01590 RS_RS01595: RS_RS01595 - DUF2917 domain-containing protein, at 356,605 to 356,964 _RS01595 Position (kb) 354 355 356Strain fitness (log2 ratio) -1 0 1at 353.705 kb on - strand, within RS_RS01580at 353.769 kb on + strand, within RS_RS01580at 353.770 kb on - strand, within RS_RS01580at 354.171 kb on - strand, within RS_RS01580at 354.441 kb on + strandat 354.470 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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353,705 - RS_RS01580 0.61 +0.1
353,769 + RS_RS01580 0.64 -0.3
353,770 - RS_RS01580 0.64 +0.8
354,171 - RS_RS01580 0.85 -0.2
354,441 + -0.4
354,470 - -1.1

Or see this region's nucleotide sequence