Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18775

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18770 and RS_RS18775 are separated by 84 nucleotidesRS_RS18775 and RS_RS18780 are separated by 517 nucleotides RS_RS18770: RS_RS18770 - porin, at 443,566 to 444,621 _RS18770 RS_RS18775: RS_RS18775 - DNA-binding response regulator, at 444,706 to 445,386 _RS18775 RS_RS18780: RS_RS18780 - flagellar protein FlgN, at 445,904 to 446,365 _RS18780 Position (kb) 444 445 446Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 443.743 kb on + strand, within RS_RS18770at 443.744 kb on - strand, within RS_RS18770at 443.744 kb on - strand, within RS_RS18770at 443.875 kb on + strand, within RS_RS18770at 443.876 kb on - strand, within RS_RS18770at 443.876 kb on - strand, within RS_RS18770at 443.935 kb on + strand, within RS_RS18770at 443.935 kb on + strand, within RS_RS18770at 443.935 kb on + strand, within RS_RS18770at 443.935 kb on + strand, within RS_RS18770at 443.936 kb on - strand, within RS_RS18770at 443.936 kb on - strand, within RS_RS18770at 443.936 kb on - strand, within RS_RS18770at 443.936 kb on - strand, within RS_RS18770at 443.936 kb on - strand, within RS_RS18770at 443.977 kb on + strand, within RS_RS18770at 443.977 kb on + strand, within RS_RS18770at 443.977 kb on + strand, within RS_RS18770at 443.978 kb on - strand, within RS_RS18770at 443.978 kb on - strand, within RS_RS18770at 443.978 kb on - strand, within RS_RS18770at 444.007 kb on + strand, within RS_RS18770at 444.008 kb on - strand, within RS_RS18770at 444.008 kb on - strand, within RS_RS18770at 444.008 kb on - strand, within RS_RS18770at 444.085 kb on + strand, within RS_RS18770at 444.085 kb on + strand, within RS_RS18770at 444.086 kb on - strand, within RS_RS18770at 444.086 kb on - strand, within RS_RS18770at 444.127 kb on + strand, within RS_RS18770at 444.128 kb on - strand, within RS_RS18770at 444.128 kb on - strand, within RS_RS18770at 444.128 kb on - strand, within RS_RS18770at 444.188 kb on - strand, within RS_RS18770at 444.188 kb on - strand, within RS_RS18770at 444.188 kb on - strand, within RS_RS18770at 444.313 kb on + strand, within RS_RS18770at 444.313 kb on + strand, within RS_RS18770at 444.314 kb on - strand, within RS_RS18770at 444.347 kb on - strand, within RS_RS18770at 444.347 kb on - strand, within RS_RS18770at 444.551 kb on - strandat 444.619 kb on + strandat 444.619 kb on + strandat 444.740 kb on + strandat 444.741 kb on - strandat 444.741 kb on - strandat 444.855 kb on + strand, within RS_RS18775at 444.855 kb on + strand, within RS_RS18775at 444.855 kb on + strand, within RS_RS18775at 444.944 kb on + strand, within RS_RS18775at 445.011 kb on + strand, within RS_RS18775at 445.028 kb on - strand, within RS_RS18775at 445.042 kb on + strand, within RS_RS18775at 445.042 kb on + strand, within RS_RS18775at 445.046 kb on + strand, within RS_RS18775at 445.046 kb on + strand, within RS_RS18775at 445.046 kb on + strand, within RS_RS18775at 445.047 kb on - strand, within RS_RS18775at 445.047 kb on - strand, within RS_RS18775at 445.047 kb on - strand, within RS_RS18775at 445.064 kb on - strand, within RS_RS18775at 445.064 kb on - strand, within RS_RS18775at 445.066 kb on + strand, within RS_RS18775at 445.067 kb on - strand, within RS_RS18775at 445.100 kb on + strand, within RS_RS18775at 445.100 kb on + strand, within RS_RS18775at 445.100 kb on + strand, within RS_RS18775at 445.115 kb on + strand, within RS_RS18775at 445.115 kb on + strand, within RS_RS18775at 445.116 kb on - strand, within RS_RS18775at 445.125 kb on + strand, within RS_RS18775at 445.185 kb on + strand, within RS_RS18775at 445.185 kb on + strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.186 kb on - strand, within RS_RS18775at 445.230 kb on + strand, within RS_RS18775at 445.440 kb on + strandat 445.440 kb on + strandat 445.440 kb on + strandat 445.440 kb on + strandat 445.440 kb on + strandat 445.441 kb on - strandat 445.441 kb on - strandat 445.479 kb on + strandat 445.480 kb on - strandat 445.480 kb on - strandat 445.545 kb on - strandat 445.723 kb on + strandat 445.766 kb on + strandat 445.770 kb on + strandat 445.771 kb on - strandat 445.906 kb on - strandat 445.962 kb on + strand, within RS_RS18780at 445.962 kb on + strand, within RS_RS18780at 445.962 kb on + strand, within RS_RS18780at 445.963 kb on - strand, within RS_RS18780at 446.133 kb on + strand, within RS_RS18780at 446.134 kb on - strand, within RS_RS18780at 446.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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443,743 + RS_RS18770 0.17 +1.3
443,744 - RS_RS18770 0.17 +0.6
443,744 - RS_RS18770 0.17 +0.4
443,875 + RS_RS18770 0.29 -0.7
443,876 - RS_RS18770 0.29 +0.7
443,876 - RS_RS18770 0.29 +0.1
443,935 + RS_RS18770 0.35 +0.2
443,935 + RS_RS18770 0.35 +0.8
443,935 + RS_RS18770 0.35 +1.3
443,935 + RS_RS18770 0.35 -0.2
443,936 - RS_RS18770 0.35 -1.5
443,936 - RS_RS18770 0.35 -1.0
443,936 - RS_RS18770 0.35 -0.2
443,936 - RS_RS18770 0.35 +0.2
443,936 - RS_RS18770 0.35 +1.4
443,977 + RS_RS18770 0.39 +0.2
443,977 + RS_RS18770 0.39 +0.3
443,977 + RS_RS18770 0.39 -0.3
443,978 - RS_RS18770 0.39 +1.3
443,978 - RS_RS18770 0.39 +0.7
443,978 - RS_RS18770 0.39 -0.2
444,007 + RS_RS18770 0.42 +0.2
444,008 - RS_RS18770 0.42 +1.9
444,008 - RS_RS18770 0.42 -0.7
444,008 - RS_RS18770 0.42 -0.7
444,085 + RS_RS18770 0.49 +2.3
444,085 + RS_RS18770 0.49 -0.1
444,086 - RS_RS18770 0.49 +2.7
444,086 - RS_RS18770 0.49 -1.5
444,127 + RS_RS18770 0.53 +0.1
444,128 - RS_RS18770 0.53 +0.8
444,128 - RS_RS18770 0.53 +0.3
444,128 - RS_RS18770 0.53 -0.2
444,188 - RS_RS18770 0.59 +0.1
444,188 - RS_RS18770 0.59 -0.7
444,188 - RS_RS18770 0.59 -1.0
444,313 + RS_RS18770 0.71 +0.0
444,313 + RS_RS18770 0.71 +0.3
444,314 - RS_RS18770 0.71 +0.6
444,347 - RS_RS18770 0.74 -0.2
444,347 - RS_RS18770 0.74 +0.5
444,551 - +0.4
444,619 + -0.1
444,619 + -2.7
444,740 + +0.1
444,741 - +0.6
444,741 - +0.1
444,855 + RS_RS18775 0.22 -0.0
444,855 + RS_RS18775 0.22 +0.3
444,855 + RS_RS18775 0.22 -0.1
444,944 + RS_RS18775 0.35 +0.7
445,011 + RS_RS18775 0.45 +0.9
445,028 - RS_RS18775 0.47 +0.3
445,042 + RS_RS18775 0.49 +0.6
445,042 + RS_RS18775 0.49 +0.9
445,046 + RS_RS18775 0.50 +0.6
445,046 + RS_RS18775 0.50 -0.2
445,046 + RS_RS18775 0.50 +0.8
445,047 - RS_RS18775 0.50 +0.9
445,047 - RS_RS18775 0.50 +0.5
445,047 - RS_RS18775 0.50 +0.7
445,064 - RS_RS18775 0.53 +0.2
445,064 - RS_RS18775 0.53 +0.8
445,066 + RS_RS18775 0.53 +0.5
445,067 - RS_RS18775 0.53 +0.3
445,100 + RS_RS18775 0.58 +0.9
445,100 + RS_RS18775 0.58 +0.6
445,100 + RS_RS18775 0.58 +0.7
445,115 + RS_RS18775 0.60 +1.8
445,115 + RS_RS18775 0.60 +0.6
445,116 - RS_RS18775 0.60 +0.2
445,125 + RS_RS18775 0.62 -1.5
445,185 + RS_RS18775 0.70 +0.8
445,185 + RS_RS18775 0.70 +1.0
445,186 - RS_RS18775 0.70 +1.5
445,186 - RS_RS18775 0.70 +0.3
445,186 - RS_RS18775 0.70 -0.2
445,186 - RS_RS18775 0.70 +0.6
445,186 - RS_RS18775 0.70 +0.0
445,186 - RS_RS18775 0.70 +0.0
445,230 + RS_RS18775 0.77 +0.9
445,440 + +0.1
445,440 + +0.3
445,440 + +1.1
445,440 + +0.6
445,440 + -1.6
445,441 - +0.2
445,441 - +0.5
445,479 + +0.6
445,480 - -2.7
445,480 - +0.1
445,545 - -1.2
445,723 + +0.7
445,766 + +0.9
445,770 + +0.4
445,771 - +0.3
445,906 - +0.7
445,962 + RS_RS18780 0.13 +0.1
445,962 + RS_RS18780 0.13 -0.3
445,962 + RS_RS18780 0.13 +1.1
445,963 - RS_RS18780 0.13 -1.0
446,133 + RS_RS18780 0.50 +0.3
446,134 - RS_RS18780 0.50 -0.2
446,352 - -2.8

Or see this region's nucleotide sequence