Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS13805

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS13800 and RS_RS13805 are separated by 99 nucleotidesRS_RS13805 and RS_RS13810 are separated by 34 nucleotides RS_RS13800: RS_RS13800 - arabinose ABC transporter substrate-binding protein, at 2,969,920 to 2,970,915 _RS13800 RS_RS13805: RS_RS13805 - 2-dehydro-3-deoxygalactonokinase, at 2,971,015 to 2,972,010 _RS13805 RS_RS13810: RS_RS13810 - porin, at 2,972,045 to 2,973,106 _RS13810 Position (kb) 2971 2972 2973Strain fitness (log2 ratio) -1 0 1at 2970.026 kb on + strand, within RS_RS13800at 2970.026 kb on + strand, within RS_RS13800at 2970.026 kb on + strand, within RS_RS13800at 2970.027 kb on - strand, within RS_RS13800at 2970.027 kb on - strand, within RS_RS13800at 2970.027 kb on - strand, within RS_RS13800at 2970.027 kb on - strand, within RS_RS13800at 2970.048 kb on - strand, within RS_RS13800at 2971.017 kb on - strandat 2971.017 kb on - strandat 2971.280 kb on + strand, within RS_RS13805at 2971.281 kb on - strand, within RS_RS13805at 2971.983 kb on + strandat 2971.990 kb on - strandat 2972.160 kb on + strand, within RS_RS13810at 2972.295 kb on + strand, within RS_RS13810at 2972.295 kb on + strand, within RS_RS13810at 2972.296 kb on - strand, within RS_RS13810at 2972.296 kb on - strand, within RS_RS13810at 2972.380 kb on - strand, within RS_RS13810at 2972.452 kb on - strand, within RS_RS13810at 2972.481 kb on + strand, within RS_RS13810at 2972.514 kb on + strand, within RS_RS13810at 2972.514 kb on + strand, within RS_RS13810at 2972.515 kb on - strand, within RS_RS13810at 2972.982 kb on + strand, within RS_RS13810at 2972.982 kb on + strand, within RS_RS13810at 2972.983 kb on - strand, within RS_RS13810at 2973.009 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,970,026 + RS_RS13800 0.11 -0.4
2,970,026 + RS_RS13800 0.11 +0.1
2,970,026 + RS_RS13800 0.11 +1.6
2,970,027 - RS_RS13800 0.11 -0.0
2,970,027 - RS_RS13800 0.11 +0.1
2,970,027 - RS_RS13800 0.11 +0.1
2,970,027 - RS_RS13800 0.11 +0.6
2,970,048 - RS_RS13800 0.13 +0.0
2,971,017 - +0.2
2,971,017 - +0.7
2,971,280 + RS_RS13805 0.27 +0.6
2,971,281 - RS_RS13805 0.27 +1.3
2,971,983 + -0.4
2,971,990 - +1.0
2,972,160 + RS_RS13810 0.11 +0.5
2,972,295 + RS_RS13810 0.24 -1.2
2,972,295 + RS_RS13810 0.24 -0.8
2,972,296 - RS_RS13810 0.24 +0.3
2,972,296 - RS_RS13810 0.24 +0.2
2,972,380 - RS_RS13810 0.32 +0.3
2,972,452 - RS_RS13810 0.38 +0.2
2,972,481 + RS_RS13810 0.41 -1.4
2,972,514 + RS_RS13810 0.44 -0.5
2,972,514 + RS_RS13810 0.44 +0.2
2,972,515 - RS_RS13810 0.44 +0.6
2,972,982 + RS_RS13810 0.88 +0.7
2,972,982 + RS_RS13810 0.88 +0.2
2,972,983 - RS_RS13810 0.88 +1.3
2,973,009 + -1.0

Or see this region's nucleotide sequence