Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01135

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS01130 and RS_RS01135 are separated by 7 nucleotidesRS_RS01135 and RS_RS01140 are separated by 422 nucleotides RS_RS01130: RS_RS01130 - membrane protein, at 252,098 to 253,294 _RS01130 RS_RS01135: RS_RS01135 - LysE family translocator, at 253,302 to 253,937 _RS01135 RS_RS01140: RS_RS01140 - hypothetical protein, at 254,360 to 255,166 _RS01140 Position (kb) 253 254Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.450 kb on + strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.451 kb on - strand, within RS_RS01130at 252.456 kb on + strand, within RS_RS01130at 252.457 kb on - strand, within RS_RS01130at 252.457 kb on - strand, within RS_RS01130at 252.534 kb on + strand, within RS_RS01130at 252.534 kb on + strand, within RS_RS01130at 252.535 kb on - strand, within RS_RS01130at 252.535 kb on - strand, within RS_RS01130at 252.535 kb on - strand, within RS_RS01130at 252.741 kb on + strand, within RS_RS01130at 252.742 kb on - strand, within RS_RS01130at 252.954 kb on + strand, within RS_RS01130at 252.954 kb on + strand, within RS_RS01130at 252.955 kb on - strand, within RS_RS01130at 252.955 kb on - strand, within RS_RS01130at 252.955 kb on - strand, within RS_RS01130at 253.430 kb on - strand, within RS_RS01135at 253.685 kb on - strand, within RS_RS01135at 253.685 kb on - strand, within RS_RS01135at 253.693 kb on + strand, within RS_RS01135at 253.694 kb on - strand, within RS_RS01135at 253.694 kb on - strand, within RS_RS01135at 253.694 kb on - strand, within RS_RS01135at 253.788 kb on - strand, within RS_RS01135at 253.981 kb on + strandat 253.981 kb on + strandat 253.982 kb on - strandat 253.982 kb on - strandat 253.982 kb on - strandat 253.982 kb on - strandat 253.982 kb on - strandat 254.163 kb on + strandat 254.177 kb on + strandat 254.178 kb on - strandat 254.197 kb on - strandat 254.278 kb on + strandat 254.279 kb on - strandat 254.287 kb on - strandat 254.287 kb on - strandat 254.359 kb on + strandat 254.359 kb on + strandat 254.378 kb on - strandat 254.532 kb on - strand, within RS_RS01140at 254.618 kb on - strand, within RS_RS01140at 254.671 kb on + strand, within RS_RS01140at 254.671 kb on + strand, within RS_RS01140at 254.924 kb on + strand, within RS_RS01140at 254.924 kb on + strand, within RS_RS01140at 254.925 kb on - strand, within RS_RS01140at 254.927 kb on + strand, within RS_RS01140at 254.927 kb on + strand, within RS_RS01140

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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252,450 + RS_RS01130 0.29 -1.2
252,450 + RS_RS01130 0.29 -0.1
252,450 + RS_RS01130 0.29 -0.4
252,450 + RS_RS01130 0.29 +0.4
252,450 + RS_RS01130 0.29 -1.4
252,450 + RS_RS01130 0.29 -0.4
252,450 + RS_RS01130 0.29 +0.1
252,450 + RS_RS01130 0.29 -0.5
252,451 - RS_RS01130 0.29 -0.7
252,451 - RS_RS01130 0.29 -0.3
252,451 - RS_RS01130 0.29 +0.1
252,451 - RS_RS01130 0.29 -0.2
252,451 - RS_RS01130 0.29 +0.1
252,451 - RS_RS01130 0.29 -0.5
252,456 + RS_RS01130 0.30 +0.9
252,457 - RS_RS01130 0.30 +0.8
252,457 - RS_RS01130 0.30 -0.1
252,534 + RS_RS01130 0.36 -3.2
252,534 + RS_RS01130 0.36 +1.6
252,535 - RS_RS01130 0.37 +0.6
252,535 - RS_RS01130 0.37 +0.4
252,535 - RS_RS01130 0.37 +0.1
252,741 + RS_RS01130 0.54 +0.2
252,742 - RS_RS01130 0.54 +0.1
252,954 + RS_RS01130 0.72 +0.3
252,954 + RS_RS01130 0.72 +2.2
252,955 - RS_RS01130 0.72 -1.4
252,955 - RS_RS01130 0.72 -1.2
252,955 - RS_RS01130 0.72 +0.6
253,430 - RS_RS01135 0.20 +0.5
253,685 - RS_RS01135 0.60 +0.5
253,685 - RS_RS01135 0.60 +0.4
253,693 + RS_RS01135 0.61 -1.1
253,694 - RS_RS01135 0.62 +0.1
253,694 - RS_RS01135 0.62 +0.1
253,694 - RS_RS01135 0.62 +0.5
253,788 - RS_RS01135 0.76 -2.0
253,981 + -0.1
253,981 + +0.7
253,982 - -1.6
253,982 - +1.6
253,982 - +0.4
253,982 - -0.2
253,982 - -0.0
254,163 + +1.6
254,177 + -0.7
254,178 - -0.6
254,197 - -0.7
254,278 + -0.5
254,279 - +3.2
254,287 - +1.6
254,287 - -0.6
254,359 + +2.4
254,359 + -0.9
254,378 - +1.2
254,532 - RS_RS01140 0.21 -0.6
254,618 - RS_RS01140 0.32 +0.5
254,671 + RS_RS01140 0.39 -1.8
254,671 + RS_RS01140 0.39 -0.1
254,924 + RS_RS01140 0.70 -1.2
254,924 + RS_RS01140 0.70 +0.1
254,925 - RS_RS01140 0.70 -2.3
254,927 + RS_RS01140 0.70 +0.1
254,927 + RS_RS01140 0.70 -0.2

Or see this region's nucleotide sequence