Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4297

Experiment: MBOA 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4296 and Psyr_4297 are separated by 248 nucleotidesPsyr_4297 and Psyr_4298 are separated by 62 nucleotides Psyr_4296: Psyr_4296 - HI0933-like protein, at 5,122,313 to 5,123,587 _4296 Psyr_4297: Psyr_4297 - Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, at 5,123,836 to 5,125,164 _4297 Psyr_4298: Psyr_4298 - Protein of unknown function DUF6, at 5,125,227 to 5,126,141 _4298 Position (kb) 5123 5124 5125 5126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.103 kb on - strand, within Psyr_4296at 5123.103 kb on - strand, within Psyr_4296at 5123.103 kb on - strand, within Psyr_4296at 5123.103 kb on - strand, within Psyr_4296at 5123.252 kb on - strand, within Psyr_4296at 5123.370 kb on + strand, within Psyr_4296at 5123.371 kb on - strand, within Psyr_4296at 5123.371 kb on - strand, within Psyr_4296at 5123.466 kb on + strandat 5123.513 kb on + strandat 5123.620 kb on + strandat 5123.621 kb on - strandat 5123.621 kb on - strandat 5123.622 kb on + strandat 5123.622 kb on + strandat 5123.623 kb on - strandat 5123.623 kb on - strandat 5123.624 kb on + strandat 5123.624 kb on + strandat 5123.624 kb on + strandat 5123.624 kb on + strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.657 kb on + strandat 5123.658 kb on - strandat 5123.793 kb on + strandat 5123.793 kb on + strandat 5123.793 kb on + strandat 5123.794 kb on - strandat 5123.794 kb on - strandat 5123.794 kb on - strandat 5123.794 kb on - strandat 5123.794 kb on - strandat 5123.795 kb on + strandat 5123.795 kb on + strandat 5123.876 kb on - strandat 5123.876 kb on - strandat 5123.880 kb on + strandat 5123.881 kb on - strandat 5123.881 kb on - strandat 5123.881 kb on - strandat 5124.182 kb on + strand, within Psyr_4297at 5124.182 kb on + strand, within Psyr_4297at 5124.182 kb on + strand, within Psyr_4297at 5124.182 kb on + strand, within Psyr_4297at 5124.182 kb on + strand, within Psyr_4297at 5124.182 kb on + strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.647 kb on + strand, within Psyr_4297at 5124.647 kb on + strand, within Psyr_4297at 5124.647 kb on + strand, within Psyr_4297at 5124.647 kb on + strand, within Psyr_4297at 5124.647 kb on + strand, within Psyr_4297at 5124.648 kb on - strand, within Psyr_4297at 5124.648 kb on - strand, within Psyr_4297at 5124.688 kb on - strand, within Psyr_4297at 5124.688 kb on - strand, within Psyr_4297at 5124.688 kb on - strand, within Psyr_4297at 5124.848 kb on + strand, within Psyr_4297at 5124.848 kb on + strand, within Psyr_4297at 5124.849 kb on - strand, within Psyr_4297at 5124.876 kb on - strand, within Psyr_4297at 5125.084 kb on + strandat 5125.084 kb on + strandat 5125.170 kb on + strandat 5125.170 kb on + strandat 5125.205 kb on + strandat 5125.396 kb on + strand, within Psyr_4298at 5125.396 kb on + strand, within Psyr_4298at 5125.397 kb on - strand, within Psyr_4298at 5125.402 kb on + strand, within Psyr_4298at 5125.403 kb on - strand, within Psyr_4298at 5125.441 kb on + strand, within Psyr_4298at 5125.441 kb on + strand, within Psyr_4298at 5125.441 kb on + strand, within Psyr_4298at 5125.441 kb on + strand, within Psyr_4298at 5125.441 kb on + strand, within Psyr_4298at 5125.441 kb on + strand, within Psyr_4298at 5125.441 kb on + strand, within Psyr_4298at 5125.441 kb on + strand, within Psyr_4298at 5125.441 kb on + strand, within Psyr_4298at 5125.441 kb on + strand, within Psyr_4298at 5125.441 kb on + strand, within Psyr_4298at 5125.442 kb on - strand, within Psyr_4298at 5125.442 kb on - strand, within Psyr_4298at 5125.442 kb on - strand, within Psyr_4298at 5125.442 kb on - strand, within Psyr_4298at 5125.442 kb on - strand, within Psyr_4298at 5125.442 kb on - strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.445 kb on + strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.446 kb on - strand, within Psyr_4298at 5125.447 kb on + strand, within Psyr_4298at 5125.447 kb on + strand, within Psyr_4298at 5125.447 kb on + strand, within Psyr_4298at 5125.447 kb on + strand, within Psyr_4298at 5125.447 kb on + strand, within Psyr_4298at 5125.447 kb on + strand, within Psyr_4298at 5125.448 kb on - strand, within Psyr_4298at 5125.448 kb on - strand, within Psyr_4298at 5125.448 kb on - strand, within Psyr_4298at 5125.448 kb on - strand, within Psyr_4298at 5125.448 kb on - strand, within Psyr_4298at 5125.448 kb on - strand, within Psyr_4298at 5125.467 kb on - strand, within Psyr_4298at 5125.486 kb on + strand, within Psyr_4298at 5125.486 kb on + strand, within Psyr_4298at 5125.486 kb on + strand, within Psyr_4298at 5125.487 kb on - strand, within Psyr_4298at 5125.487 kb on - strand, within Psyr_4298at 5125.520 kb on + strand, within Psyr_4298at 5125.687 kb on + strand, within Psyr_4298at 5125.687 kb on + strand, within Psyr_4298at 5125.981 kb on + strand, within Psyr_4298at 5125.981 kb on + strand, within Psyr_4298at 5125.981 kb on + strand, within Psyr_4298at 5125.981 kb on + strand, within Psyr_4298at 5125.981 kb on + strand, within Psyr_4298at 5125.981 kb on + strand, within Psyr_4298at 5125.981 kb on + strand, within Psyr_4298at 5125.982 kb on - strand, within Psyr_4298at 5125.982 kb on - strand, within Psyr_4298at 5125.982 kb on - strand, within Psyr_4298at 5125.982 kb on - strand, within Psyr_4298at 5125.982 kb on - strand, within Psyr_4298at 5126.065 kb on + strandat 5126.065 kb on + strandat 5126.065 kb on + strandat 5126.065 kb on + strandat 5126.065 kb on + strandat 5126.066 kb on - strandat 5126.066 kb on - strandat 5126.066 kb on - strandat 5126.069 kb on + strandat 5126.070 kb on - strandat 5126.087 kb on - strandat 5126.087 kb on - strandat 5126.146 kb on - strandat 5126.164 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MBOA 2.5 mM
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5,123,102 + Psyr_4296 0.62 -0.4
5,123,102 + Psyr_4296 0.62 -1.0
5,123,102 + Psyr_4296 0.62 -1.8
5,123,102 + Psyr_4296 0.62 -0.2
5,123,102 + Psyr_4296 0.62 +0.6
5,123,102 + Psyr_4296 0.62 +0.4
5,123,102 + Psyr_4296 0.62 -1.0
5,123,102 + Psyr_4296 0.62 +0.6
5,123,102 + Psyr_4296 0.62 +0.5
5,123,102 + Psyr_4296 0.62 +0.2
5,123,103 - Psyr_4296 0.62 -0.8
5,123,103 - Psyr_4296 0.62 +1.0
5,123,103 - Psyr_4296 0.62 +0.3
5,123,103 - Psyr_4296 0.62 +0.7
5,123,252 - Psyr_4296 0.74 +1.3
5,123,370 + Psyr_4296 0.83 +0.2
5,123,371 - Psyr_4296 0.83 -0.4
5,123,371 - Psyr_4296 0.83 +0.2
5,123,466 + +0.0
5,123,513 + +0.8
5,123,620 + -1.3
5,123,621 - +0.7
5,123,621 - +0.8
5,123,622 + -0.4
5,123,622 + -0.1
5,123,623 - +0.3
5,123,623 - -0.1
5,123,624 + -0.1
5,123,624 + -0.4
5,123,624 + +0.3
5,123,624 + +0.9
5,123,625 - +0.7
5,123,625 - -0.0
5,123,625 - -0.2
5,123,625 - -1.9
5,123,625 - +0.0
5,123,625 - -1.0
5,123,625 - +0.7
5,123,625 - +0.2
5,123,625 - -0.7
5,123,625 - -0.0
5,123,625 - -0.1
5,123,625 - +0.1
5,123,657 + +0.7
5,123,658 - -0.6
5,123,793 + +0.4
5,123,793 + +1.3
5,123,793 + -1.6
5,123,794 - -0.4
5,123,794 - +0.4
5,123,794 - +0.5
5,123,794 - -0.7
5,123,794 - +0.7
5,123,795 + -0.0
5,123,795 + +0.6
5,123,876 - -0.7
5,123,876 - +0.2
5,123,880 + +0.2
5,123,881 - -0.1
5,123,881 - +1.7
5,123,881 - -0.9
5,124,182 + Psyr_4297 0.26 +0.3
5,124,182 + Psyr_4297 0.26 +1.4
5,124,182 + Psyr_4297 0.26 -0.0
5,124,182 + Psyr_4297 0.26 -1.8
5,124,182 + Psyr_4297 0.26 -0.1
5,124,182 + Psyr_4297 0.26 +1.4
5,124,183 - Psyr_4297 0.26 +1.4
5,124,183 - Psyr_4297 0.26 -0.3
5,124,183 - Psyr_4297 0.26 +0.7
5,124,183 - Psyr_4297 0.26 -0.3
5,124,183 - Psyr_4297 0.26 +2.7
5,124,183 - Psyr_4297 0.26 -0.6
5,124,183 - Psyr_4297 0.26 -0.2
5,124,183 - Psyr_4297 0.26 +0.7
5,124,183 - Psyr_4297 0.26 -1.0
5,124,647 + Psyr_4297 0.61 +1.0
5,124,647 + Psyr_4297 0.61 +0.5
5,124,647 + Psyr_4297 0.61 -0.5
5,124,647 + Psyr_4297 0.61 +1.6
5,124,647 + Psyr_4297 0.61 -0.6
5,124,648 - Psyr_4297 0.61 +1.1
5,124,648 - Psyr_4297 0.61 +1.7
5,124,688 - Psyr_4297 0.64 +0.2
5,124,688 - Psyr_4297 0.64 +1.8
5,124,688 - Psyr_4297 0.64 -0.8
5,124,848 + Psyr_4297 0.76 +0.6
5,124,848 + Psyr_4297 0.76 +0.5
5,124,849 - Psyr_4297 0.76 -0.9
5,124,876 - Psyr_4297 0.78 +0.3
5,125,084 + +1.0
5,125,084 + +0.1
5,125,170 + +0.6
5,125,170 + +0.5
5,125,205 + -0.0
5,125,396 + Psyr_4298 0.18 -1.0
5,125,396 + Psyr_4298 0.18 +0.0
5,125,397 - Psyr_4298 0.19 -1.3
5,125,402 + Psyr_4298 0.19 -0.8
5,125,403 - Psyr_4298 0.19 -0.2
5,125,441 + Psyr_4298 0.23 +0.5
5,125,441 + Psyr_4298 0.23 -0.8
5,125,441 + Psyr_4298 0.23 -0.3
5,125,441 + Psyr_4298 0.23 -0.5
5,125,441 + Psyr_4298 0.23 -2.9
5,125,441 + Psyr_4298 0.23 +3.6
5,125,441 + Psyr_4298 0.23 -0.4
5,125,441 + Psyr_4298 0.23 +0.6
5,125,441 + Psyr_4298 0.23 -2.4
5,125,441 + Psyr_4298 0.23 -0.2
5,125,441 + Psyr_4298 0.23 +0.0
5,125,442 - Psyr_4298 0.23 +0.2
5,125,442 - Psyr_4298 0.23 -2.0
5,125,442 - Psyr_4298 0.23 +0.6
5,125,442 - Psyr_4298 0.23 +1.0
5,125,442 - Psyr_4298 0.23 -0.3
5,125,442 - Psyr_4298 0.23 -0.1
5,125,445 + Psyr_4298 0.24 -0.2
5,125,445 + Psyr_4298 0.24 +1.0
5,125,445 + Psyr_4298 0.24 -0.4
5,125,445 + Psyr_4298 0.24 +0.0
5,125,445 + Psyr_4298 0.24 +1.3
5,125,445 + Psyr_4298 0.24 -0.4
5,125,445 + Psyr_4298 0.24 -0.7
5,125,445 + Psyr_4298 0.24 -1.6
5,125,445 + Psyr_4298 0.24 +0.4
5,125,445 + Psyr_4298 0.24 +0.1
5,125,445 + Psyr_4298 0.24 -0.5
5,125,445 + Psyr_4298 0.24 +1.0
5,125,445 + Psyr_4298 0.24 -1.2
5,125,445 + Psyr_4298 0.24 -0.8
5,125,445 + Psyr_4298 0.24 +1.3
5,125,445 + Psyr_4298 0.24 +0.4
5,125,445 + Psyr_4298 0.24 -0.6
5,125,445 + Psyr_4298 0.24 +1.0
5,125,445 + Psyr_4298 0.24 -0.1
5,125,445 + Psyr_4298 0.24 +0.3
5,125,445 + Psyr_4298 0.24 +2.0
5,125,445 + Psyr_4298 0.24 -0.1
5,125,445 + Psyr_4298 0.24 +0.4
5,125,446 - Psyr_4298 0.24 -0.1
5,125,446 - Psyr_4298 0.24 +0.5
5,125,446 - Psyr_4298 0.24 +0.8
5,125,446 - Psyr_4298 0.24 -0.8
5,125,446 - Psyr_4298 0.24 +0.3
5,125,446 - Psyr_4298 0.24 -0.0
5,125,446 - Psyr_4298 0.24 +0.6
5,125,446 - Psyr_4298 0.24 -0.5
5,125,446 - Psyr_4298 0.24 +0.5
5,125,446 - Psyr_4298 0.24 +0.2
5,125,446 - Psyr_4298 0.24 -0.2
5,125,446 - Psyr_4298 0.24 -0.3
5,125,446 - Psyr_4298 0.24 +0.4
5,125,446 - Psyr_4298 0.24 -0.8
5,125,446 - Psyr_4298 0.24 -1.0
5,125,446 - Psyr_4298 0.24 -0.3
5,125,446 - Psyr_4298 0.24 +0.2
5,125,446 - Psyr_4298 0.24 -0.5
5,125,446 - Psyr_4298 0.24 -1.2
5,125,446 - Psyr_4298 0.24 -0.6
5,125,446 - Psyr_4298 0.24 +0.5
5,125,446 - Psyr_4298 0.24 +0.3
5,125,446 - Psyr_4298 0.24 -0.9
5,125,446 - Psyr_4298 0.24 -0.2
5,125,446 - Psyr_4298 0.24 +0.2
5,125,446 - Psyr_4298 0.24 -0.2
5,125,447 + Psyr_4298 0.24 +1.7
5,125,447 + Psyr_4298 0.24 -0.7
5,125,447 + Psyr_4298 0.24 +0.4
5,125,447 + Psyr_4298 0.24 -0.6
5,125,447 + Psyr_4298 0.24 +0.3
5,125,447 + Psyr_4298 0.24 -0.6
5,125,448 - Psyr_4298 0.24 -0.4
5,125,448 - Psyr_4298 0.24 -1.8
5,125,448 - Psyr_4298 0.24 +1.4
5,125,448 - Psyr_4298 0.24 -0.5
5,125,448 - Psyr_4298 0.24 -0.1
5,125,448 - Psyr_4298 0.24 -0.5
5,125,467 - Psyr_4298 0.26 -0.9
5,125,486 + Psyr_4298 0.28 +1.6
5,125,486 + Psyr_4298 0.28 +0.2
5,125,486 + Psyr_4298 0.28 +0.1
5,125,487 - Psyr_4298 0.28 +0.4
5,125,487 - Psyr_4298 0.28 -0.9
5,125,520 + Psyr_4298 0.32 -0.9
5,125,687 + Psyr_4298 0.50 -0.0
5,125,687 + Psyr_4298 0.50 +1.6
5,125,981 + Psyr_4298 0.82 +0.2
5,125,981 + Psyr_4298 0.82 +0.1
5,125,981 + Psyr_4298 0.82 +0.8
5,125,981 + Psyr_4298 0.82 +0.2
5,125,981 + Psyr_4298 0.82 -0.1
5,125,981 + Psyr_4298 0.82 -0.4
5,125,981 + Psyr_4298 0.82 -0.8
5,125,982 - Psyr_4298 0.83 -1.2
5,125,982 - Psyr_4298 0.83 -1.9
5,125,982 - Psyr_4298 0.83 -0.8
5,125,982 - Psyr_4298 0.83 -0.1
5,125,982 - Psyr_4298 0.83 +0.0
5,126,065 + -0.3
5,126,065 + +0.3
5,126,065 + -0.4
5,126,065 + +1.2
5,126,065 + -0.9
5,126,066 - -0.2
5,126,066 - -0.4
5,126,066 - -0.8
5,126,069 + -0.9
5,126,070 - -0.1
5,126,087 - +0.7
5,126,087 - +0.9
5,126,146 - +0.5
5,126,164 + -0.0

Or see this region's nucleotide sequence