Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2537

Experiment: MBOA 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2536 and Psyr_2537 are separated by 318 nucleotidesPsyr_2537 and Psyr_2538 overlap by 4 nucleotidesPsyr_2538 and Psyr_2539 overlap by 4 nucleotides Psyr_2536: Psyr_2536 - transcriptional regulator, LysR family, at 2,950,688 to 2,951,677 _2536 Psyr_2537: Psyr_2537 - conserved hypothetical protein, at 2,951,996 to 2,953,456 _2537 Psyr_2538: Psyr_2538 - Binding-protein-dependent transport systems inner membrane component, at 2,953,453 to 2,954,427 _2538 Psyr_2539: Psyr_2539 - Binding-protein-dependent transport systems inner membrane component, at 2,954,424 to 2,955,344 _2539 Position (kb) 2951 2952 2953 2954Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2951.392 kb on + strand, within Psyr_2536at 2951.392 kb on + strand, within Psyr_2536at 2951.392 kb on + strand, within Psyr_2536at 2951.392 kb on + strand, within Psyr_2536at 2951.392 kb on + strand, within Psyr_2536at 2951.393 kb on - strand, within Psyr_2536at 2951.666 kb on + strandat 2951.666 kb on + strandat 2951.667 kb on - strandat 2951.667 kb on - strandat 2951.667 kb on - strandat 2951.667 kb on - strandat 2951.675 kb on + strandat 2951.690 kb on + strandat 2951.800 kb on - strandat 2951.884 kb on + strandat 2952.401 kb on + strand, within Psyr_2537at 2952.439 kb on - strand, within Psyr_2537at 2952.439 kb on - strand, within Psyr_2537at 2952.454 kb on + strand, within Psyr_2537at 2952.455 kb on - strand, within Psyr_2537at 2952.866 kb on + strand, within Psyr_2537at 2953.001 kb on - strand, within Psyr_2537at 2953.265 kb on + strand, within Psyr_2537at 2953.813 kb on - strand, within Psyr_2538at 2953.816 kb on + strand, within Psyr_2538at 2953.817 kb on - strand, within Psyr_2538at 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.384 kb on - strandat 2954.385 kb on - strandat 2954.387 kb on - strandat 2954.387 kb on - strandat 2954.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MBOA 2.5 mM
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2,951,392 + Psyr_2536 0.71 +1.2
2,951,392 + Psyr_2536 0.71 -0.9
2,951,392 + Psyr_2536 0.71 -1.0
2,951,392 + Psyr_2536 0.71 +1.2
2,951,392 + Psyr_2536 0.71 +0.1
2,951,393 - Psyr_2536 0.71 +0.3
2,951,666 + -2.0
2,951,666 + -0.6
2,951,667 - -1.5
2,951,667 - -0.6
2,951,667 - +0.4
2,951,667 - +0.1
2,951,675 + -0.1
2,951,690 + +0.9
2,951,800 - -0.1
2,951,884 + -3.7
2,952,401 + Psyr_2537 0.28 -0.1
2,952,439 - Psyr_2537 0.30 +1.6
2,952,439 - Psyr_2537 0.30 +1.4
2,952,454 + Psyr_2537 0.31 -0.3
2,952,455 - Psyr_2537 0.31 -0.4
2,952,866 + Psyr_2537 0.60 +1.9
2,953,001 - Psyr_2537 0.69 -2.5
2,953,265 + Psyr_2537 0.87 +1.6
2,953,813 - Psyr_2538 0.37 -2.1
2,953,816 + Psyr_2538 0.37 -0.6
2,953,817 - Psyr_2538 0.37 -1.5
2,954,383 + -2.3
2,954,383 + -0.0
2,954,383 + -0.7
2,954,383 + +0.2
2,954,383 + -0.4
2,954,383 + -1.6
2,954,384 - -0.1
2,954,385 - +0.5
2,954,387 - +0.4
2,954,387 - -1.1
2,954,406 - -0.1

Or see this region's nucleotide sequence