Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1116

Experiment: MBOA 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 2.5 mM
1,263,473	+		Psyr_1114	0.86	+0.3
1,263,473	+		Psyr_1114	0.86	-1.5
1,263,473	+		Psyr_1114	0.86	+0.7
1,263,473	+		Psyr_1114	0.86	-0.4
1,263,474	-		Psyr_1114	0.86	+1.9
1,263,474	-		Psyr_1114	0.86	-0.9
1,263,474	-		Psyr_1114	0.86	-0.3
1,263,474	-		Psyr_1114	0.86	+1.1
1,263,563	+				-1.5
1,263,563	+				+0.3
1,263,569	+				+1.4
1,263,599	+				+0.0
1,263,599	+				+0.1
1,263,646	-				+1.4
1,263,763	+		Psyr_1115	0.20	-0.3
1,263,784	+		Psyr_1115	0.22	-0.5
1,263,785	-		Psyr_1115	0.23	+0.2
1,263,810	+		Psyr_1115	0.26	+0.6
1,263,811	-		Psyr_1115	0.26	+0.4
1,263,811	-		Psyr_1115	0.26	+0.6
1,263,882	+		Psyr_1115	0.34	+0.4
1,263,882	+		Psyr_1115	0.34	-1.7
1,263,882	+		Psyr_1115	0.34	-0.9
1,263,882	+		Psyr_1115	0.34	-1.4
1,263,882	+		Psyr_1115	0.34	-0.8
1,263,882	+		Psyr_1115	0.34	-0.6
1,263,882	+		Psyr_1115	0.34	+0.3
1,263,883	-		Psyr_1115	0.34	-0.2
1,263,883	-		Psyr_1115	0.34	+0.9
1,263,986	+		Psyr_1115	0.46	+1.4
1,263,987	-		Psyr_1115	0.46	+0.4
1,263,987	-		Psyr_1115	0.46	-0.5
1,263,987	-		Psyr_1115	0.46	-0.5
1,263,987	-		Psyr_1115	0.46	-0.1
1,264,061	+		Psyr_1115	0.55	+0.4
1,264,062	-		Psyr_1115	0.55	-1.5
1,264,062	-		Psyr_1115	0.55	+0.3
1,264,069	+		Psyr_1115	0.56	-1.4
1,264,070	-		Psyr_1115	0.56	-0.4
1,264,083	+		Psyr_1115	0.58	-0.2
1,264,083	+		Psyr_1115	0.58	-1.2
1,264,083	+		Psyr_1115	0.58	-1.4
1,264,083	+		Psyr_1115	0.58	-0.2
1,264,083	+		Psyr_1115	0.58	-0.1
1,264,083	+		Psyr_1115	0.58	+0.6
1,264,084	-		Psyr_1115	0.58	+1.1
1,264,084	-		Psyr_1115	0.58	-0.7
1,264,084	-		Psyr_1115	0.58	-1.3
1,264,084	-		Psyr_1115	0.58	-0.3
1,264,086	+		Psyr_1115	0.58	-0.4
1,264,086	+		Psyr_1115	0.58	-1.0
1,264,086	+		Psyr_1115	0.58	-1.3
1,264,087	-		Psyr_1115	0.58	-0.0
1,264,326	+		Psyr_1115	0.87	-1.5
1,264,326	+		Psyr_1115	0.87	-0.2
1,264,327	-		Psyr_1115	0.87	+0.8
1,264,327	-		Psyr_1115	0.87	+0.7
1,264,327	-		Psyr_1115	0.87	-0.9
1,264,327	-		Psyr_1115	0.87	-0.3
1,264,327	-		Psyr_1115	0.87	+0.1
1,264,327	-		Psyr_1115	0.87	+1.1
1,264,380	+				+0.4
1,264,381	-				-0.3
1,264,381	-				-2.0
1,264,381	-				-3.3
1,264,384	+				+0.3
1,264,398	+				+0.2
1,264,398	+				+1.1
1,264,398	+				-0.6
1,264,398	+				-0.7
1,264,398	+				+0.4
1,264,399	-				+0.6
1,264,399	-				+0.3
1,264,438	-				-1.4
1,264,438	-				+1.0
1,264,458	+				-0.2
1,264,459	-				-1.6
1,264,478	+				-0.9
1,264,479	-				-0.6
1,264,479	-				+2.6
1,264,479	-				-0.6
1,264,479	-				-0.7
1,264,697	+		Psyr_1116	0.22	+1.0
1,264,698	-		Psyr_1116	0.22	+0.3
1,264,698	-		Psyr_1116	0.22	-0.2
1,264,698	-		Psyr_1116	0.22	+0.2
1,264,910	+		Psyr_1116	0.40	-2.4
1,264,910	+		Psyr_1116	0.40	-0.5
1,264,910	+		Psyr_1116	0.40	-0.1
1,264,910	+		Psyr_1116	0.40	-1.0
1,264,910	+		Psyr_1116	0.40	-0.2
1,264,910	+		Psyr_1116	0.40	-0.5
1,264,910	+		Psyr_1116	0.40	-0.0
1,264,910	+		Psyr_1116	0.40	-0.4
1,264,910	+		Psyr_1116	0.40	-0.6
1,264,911	-		Psyr_1116	0.40	-1.9
1,264,911	-		Psyr_1116	0.40	-0.1
1,265,012	+		Psyr_1116	0.49	-0.5
1,265,012	+		Psyr_1116	0.49	-0.9
1,265,012	+		Psyr_1116	0.49	+0.3
1,265,012	+		Psyr_1116	0.49	+0.2
1,265,012	+		Psyr_1116	0.49	-0.3
1,265,012	+		Psyr_1116	0.49	-0.0
1,265,012	+		Psyr_1116	0.49	-0.7
1,265,012	+		Psyr_1116	0.49	-0.0
1,265,012	+		Psyr_1116	0.49	-0.2
1,265,012	+		Psyr_1116	0.49	+0.1
1,265,013	-		Psyr_1116	0.49	+0.6
1,265,013	-		Psyr_1116	0.49	+0.2
1,265,013	-		Psyr_1116	0.49	+0.4
1,265,013	-		Psyr_1116	0.49	-0.0
1,265,013	-		Psyr_1116	0.49	-0.0
1,265,013	-		Psyr_1116	0.49	-1.0
1,265,013	-		Psyr_1116	0.49	-0.2
1,265,013	-		Psyr_1116	0.49	-0.9
1,265,013	-		Psyr_1116	0.49	-0.2
1,265,013	-		Psyr_1116	0.49	+0.1
1,265,013	-		Psyr_1116	0.49	-0.8
1,265,013	-		Psyr_1116	0.49	-1.4
1,265,013	-		Psyr_1116	0.49	-0.4
1,265,013	-		Psyr_1116	0.49	+0.3
1,265,111	+		Psyr_1116	0.57	-0.4
1,265,111	+		Psyr_1116	0.57	-1.1
1,265,111	+		Psyr_1116	0.57	+0.4
1,265,111	+		Psyr_1116	0.57	-1.4
1,265,111	+		Psyr_1116	0.57	-1.1
1,265,111	+		Psyr_1116	0.57	-0.8
1,265,111	+		Psyr_1116	0.57	-0.5
1,265,112	-		Psyr_1116	0.57	-0.8
1,265,314	+		Psyr_1116	0.75	-0.3
1,265,314	+		Psyr_1116	0.75	+1.0
1,265,314	+		Psyr_1116	0.75	+0.6
1,265,314	+		Psyr_1116	0.75	-0.2
1,265,314	+		Psyr_1116	0.75	+0.1
1,265,314	+		Psyr_1116	0.75	-0.1
1,265,314	+		Psyr_1116	0.75	-0.4
1,265,314	+		Psyr_1116	0.75	-0.2
1,265,315	-		Psyr_1116	0.75	-0.9
1,265,315	-		Psyr_1116	0.75	-1.6
1,265,315	-		Psyr_1116	0.75	+0.2
1,265,315	-		Psyr_1116	0.75	-0.5
1,265,476	+		Psyr_1116	0.88	-0.5
1,265,476	+		Psyr_1116	0.88	-2.6
1,265,477	-		Psyr_1116	0.88	-0.0
1,265,477	-		Psyr_1116	0.88	+0.2
1,265,604	+				+0.1
1,265,605	-				+0.5
1,265,672	+				+0.0
1,265,672	+				+0.0
1,265,672	+				+1.9
1,265,672	+				+0.1
1,265,672	+				+0.9
1,265,672	+				-0.9
1,265,672	+				+0.2
1,265,673	-				+0.4
1,265,673	-				-0.3
1,265,673	-				+1.1
1,265,700	+				+0.1
1,265,709	+				+0.2
1,265,709	+				-1.0
1,265,710	-				-1.0
1,265,712	+				-0.9
1,265,713	-				-1.4
1,265,718	+				-1.6
1,265,718	+				+0.0
1,265,719	-				+0.1
1,265,757	+				-0.3
1,265,757	+				-0.5
1,265,757	+				-0.0
1,265,757	+				-1.3
1,265,758	-				-1.8
1,265,783	+				+0.4
1,265,784	-				-1.5
1,265,784	-				+1.1
1,265,933	-		Psyr_1117	0.14	-1.3
1,265,933	-		Psyr_1117	0.14	+0.1
1,265,933	-		Psyr_1117	0.14	-0.3
1,266,097	-		Psyr_1117	0.26	-0.1
1,266,097	-		Psyr_1117	0.26	+0.5
1,266,208	+		Psyr_1117	0.35	-1.7
1,266,208	+		Psyr_1117	0.35	+0.1
1,266,208	+		Psyr_1117	0.35	+1.7
1,266,209	-		Psyr_1117	0.35	-0.6
1,266,209	-		Psyr_1117	0.35	-0.4
1,266,322	+		Psyr_1117	0.43	-0.2
1,266,322	+		Psyr_1117	0.43	-1.2
1,266,322	+		Psyr_1117	0.43	-0.4
1,266,322	+		Psyr_1117	0.43	-0.6
1,266,322	+		Psyr_1117	0.43	-0.4
1,266,323	-		Psyr_1117	0.43	-0.4
1,266,323	-		Psyr_1117	0.43	-0.7
1,266,323	-		Psyr_1117	0.43	+1.8
1,266,328	-		Psyr_1117	0.43	-1.5
1,266,330	+		Psyr_1117	0.44	-0.2
1,266,330	+		Psyr_1117	0.44	-0.6
1,266,330	+		Psyr_1117	0.44	+0.6
1,266,331	-		Psyr_1117	0.44	-0.6
1,266,331	-		Psyr_1117	0.44	-0.0
1,266,337	+		Psyr_1117	0.44	-0.2
1,266,338	-		Psyr_1117	0.44	+0.7
1,266,348	+		Psyr_1117	0.45	+1.1
1,266,349	-		Psyr_1117	0.45	-1.8
1,266,376	+		Psyr_1117	0.47	+0.2
1,266,376	+		Psyr_1117	0.47	+0.1
1,266,376	+		Psyr_1117	0.47	-0.3
1,266,377	-		Psyr_1117	0.47	-0.9
1,266,377	-		Psyr_1117	0.47	-0.8
1,266,377	-		Psyr_1117	0.47	-0.1
1,266,377	-		Psyr_1117	0.47	-0.2
1,266,377	-		Psyr_1117	0.47	-0.2
1,266,377	-		Psyr_1117	0.47	+0.6
1,266,397	+		Psyr_1117	0.48	-0.2
1,266,398	-		Psyr_1117	0.49	-1.1
1,266,398	-		Psyr_1117	0.49	+1.1
1,266,398	-		Psyr_1117	0.49	+0.6
1,266,398	-		Psyr_1117	0.49	-0.3
1,266,415	+		Psyr_1117	0.50	+1.0
1,266,416	-		Psyr_1117	0.50	+0.1
1,266,556	+		Psyr_1117	0.60	-1.4
1,266,556	+		Psyr_1117	0.60	-0.4
1,266,556	+		Psyr_1117	0.60	-0.7
1,266,556	+		Psyr_1117	0.60	+2.4
1,266,556	+		Psyr_1117	0.60	-0.1
1,266,556	+		Psyr_1117	0.60	-0.3
1,266,556	+		Psyr_1117	0.60	-0.3
1,266,556	+		Psyr_1117	0.60	+0.2
1,266,557	-		Psyr_1117	0.60	+1.6
1,266,557	-		Psyr_1117	0.60	+0.2
1,266,586	+		Psyr_1117	0.62	-1.9
1,266,587	-		Psyr_1117	0.62	+0.6