Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0110

Experiment: MBOA 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 2.5 mM
120,519	+				-1.7
120,519	+				-0.4
120,520	-				-1.2
120,520	-				-0.4
120,520	-				+0.7
120,622	+				+1.2
120,649	-				-0.6
120,664	+				-1.1
120,665	-				+0.3
120,680	+				+0.0
120,680	+				+0.2
120,680	+				-0.8
120,681	-				-0.4
120,681	-				+2.1
120,688	+				-0.6
120,688	+				-0.0
120,688	+				+0.1
120,689	-				-0.6
120,693	+				+0.1
120,694	-				+0.2
120,694	-				-1.4
120,694	-				+0.2
120,694	-				+0.6
120,741	-				+0.7
120,741	-				-1.8
120,741	-				-0.1
120,759	+				+2.1
120,759	+				-0.3
120,760	-				+0.7
120,760	-				-0.3
120,769	+		Psyr_0109	0.12	-0.3
120,769	+		Psyr_0109	0.12	+0.1
120,829	+		Psyr_0109	0.26	+0.3
120,908	-		Psyr_0109	0.44	-0.8
120,909	+		Psyr_0109	0.45	-0.4
120,910	-		Psyr_0109	0.45	+0.3
120,910	-		Psyr_0109	0.45	-0.4
120,917	+		Psyr_0109	0.46	+0.4
120,917	+		Psyr_0109	0.46	+0.4
120,918	-		Psyr_0109	0.47	+0.2
120,918	-		Psyr_0109	0.47	-0.2
120,918	-		Psyr_0109	0.47	+0.6
120,918	-		Psyr_0109	0.47	-0.2
120,927	-		Psyr_0109	0.49	-0.3
120,939	+		Psyr_0109	0.52	+0.9
120,950	+		Psyr_0109	0.54	-0.2
121,001	-		Psyr_0109	0.66	+0.4
121,001	-		Psyr_0109	0.66	-0.3
121,019	+		Psyr_0109	0.70	-0.4
121,019	+		Psyr_0109	0.70	-0.2
121,019	+		Psyr_0109	0.70	+0.5
121,019	+		Psyr_0109	0.70	-0.1
121,019	+		Psyr_0109	0.70	+1.1
121,019	+		Psyr_0109	0.70	-2.0
121,020	-		Psyr_0109	0.71	-0.1
121,020	-		Psyr_0109	0.71	+0.8
121,020	-		Psyr_0109	0.71	-0.8
121,021	+		Psyr_0109	0.71	-0.7
121,022	-		Psyr_0109	0.71	-1.3
121,091	+		Psyr_0109	0.87	+0.2
121,126	+				-2.6
121,126	+				+0.3
121,127	-				+0.4
121,139	-				+0.0
121,139	-				-0.3
121,142	+				+1.3
121,239	-				+1.7
121,239	-				+0.1
121,251	+				+0.5
121,251	+				-1.7
121,251	+				+0.3
121,251	+				-0.1
121,251	+				-0.8
121,251	+				-0.8
121,251	+				-0.9
121,251	+				+0.0
121,251	+				+1.6
121,252	-				+0.6
121,252	-				-0.5
121,255	+				+0.5
121,255	+				-0.0
121,255	+				-2.5
121,255	+				+0.1
121,255	+				-0.3
121,256	-				-0.0
121,256	-				-1.5
121,256	-				-0.3
121,338	+				-0.3
121,338	+				+0.2
121,339	-				-0.5
121,364	+				-0.3
121,364	+				-0.4
121,365	-				+0.8
121,412	+				+0.2
121,412	+				+0.3
121,459	-				-0.5
121,505	+				-0.3
121,505	+				+1.0
121,505	+				-0.2
121,505	+				+0.2
121,505	+				-0.4
121,505	+				+0.1
121,505	+				-0.7
121,505	+				-0.5
121,505	+				-0.9
121,505	+				-0.7
121,505	+				+0.1
121,506	-				-0.1
121,506	-				-0.4
121,506	-				-0.2
121,506	-				+3.3
121,522	-				-0.9
121,550	+				-0.5
121,551	-				-0.5
121,551	-				-0.7
121,551	-				-1.8
121,551	-				-1.3
121,565	+				+0.4
121,571	+				+0.1
121,571	+				+1.1
121,571	+				-0.3
121,571	+				-0.9
121,571	+				-0.1
121,571	+				-2.3
121,571	+				+0.1
121,571	+				+0.0
121,571	+				+2.3
121,571	+				-0.4
121,571	+				+0.1
121,571	+				+0.1
121,571	+				+0.6
121,571	+				-0.2
121,571	+				+0.7
121,572	-				-0.3
121,572	-				+0.2
121,572	-				-0.3
121,572	-				-1.3
121,572	-				-0.3
121,572	-				+0.1
121,572	-				+0.1
121,572	-				+1.6
121,572	-				+0.0
121,572	-				-1.4
121,572	-				-1.1
121,572	-				+0.1
121,572	-				+0.8
121,572	-				+0.6
121,654	+		Psyr_0110	0.17	+1.2
121,655	-		Psyr_0110	0.17	-0.0
121,689	+		Psyr_0110	0.21	-0.3
121,792	-		Psyr_0110	0.33	+0.3
121,836	+		Psyr_0110	0.38	-1.3
121,836	+		Psyr_0110	0.38	+0.0
121,836	+		Psyr_0110	0.38	-0.5
121,836	+		Psyr_0110	0.38	-0.8
121,836	+		Psyr_0110	0.38	-0.5
121,837	-		Psyr_0110	0.38	+1.9
121,837	-		Psyr_0110	0.38	-0.8
121,865	+		Psyr_0110	0.42	+0.2
121,866	-		Psyr_0110	0.42	+0.4
121,866	-		Psyr_0110	0.42	-1.0
121,866	-		Psyr_0110	0.42	+0.6
121,866	-		Psyr_0110	0.42	+1.0
121,899	+		Psyr_0110	0.46	+0.1
121,915	+		Psyr_0110	0.48	-0.4
121,916	-		Psyr_0110	0.48	-0.1
121,916	-		Psyr_0110	0.48	-0.1
121,931	-		Psyr_0110	0.49	+1.7
121,931	-		Psyr_0110	0.49	-1.3
121,956	-		Psyr_0110	0.52	-0.6
121,967	+		Psyr_0110	0.54	-0.0
121,967	+		Psyr_0110	0.54	+0.3
121,967	+		Psyr_0110	0.54	+0.7
121,967	+		Psyr_0110	0.54	-0.3
121,967	+		Psyr_0110	0.54	+0.9
121,967	+		Psyr_0110	0.54	-1.4
121,967	+		Psyr_0110	0.54	+0.4
121,967	+		Psyr_0110	0.54	-1.8
121,967	+		Psyr_0110	0.54	+0.0
121,967	+		Psyr_0110	0.54	+0.6
121,967	+		Psyr_0110	0.54	+0.2
121,967	+		Psyr_0110	0.54	-0.3
121,968	-		Psyr_0110	0.54	-1.6
121,968	-		Psyr_0110	0.54	+0.3
121,968	-		Psyr_0110	0.54	+0.2
121,968	-		Psyr_0110	0.54	-0.8
121,968	-		Psyr_0110	0.54	-2.3
121,968	-		Psyr_0110	0.54	+0.4
121,968	-		Psyr_0110	0.54	+0.1
121,968	-		Psyr_0110	0.54	-0.7
121,968	-		Psyr_0110	0.54	+0.8
121,968	-		Psyr_0110	0.54	+0.2
121,968	-		Psyr_0110	0.54	+0.3
121,968	-		Psyr_0110	0.54	-0.6
122,012	+		Psyr_0110	0.59	+0.1
122,013	-		Psyr_0110	0.59	-0.8
122,141	+		Psyr_0110	0.74	-0.7
122,141	+		Psyr_0110	0.74	-0.6
122,141	+		Psyr_0110	0.74	-1.5
122,141	+		Psyr_0110	0.74	-1.7
122,141	+		Psyr_0110	0.74	-0.7
122,141	+		Psyr_0110	0.74	+0.5
122,141	+		Psyr_0110	0.74	-1.7
122,142	-		Psyr_0110	0.74	-0.3
122,142	-		Psyr_0110	0.74	+2.7
122,142	-		Psyr_0110	0.74	-0.9
122,146	+		Psyr_0110	0.75	+0.3
122,146	+		Psyr_0110	0.75	-1.7
122,146	+		Psyr_0110	0.75	+0.2
122,146	+		Psyr_0110	0.75	+0.8
122,147	-		Psyr_0110	0.75	-0.7
122,147	-		Psyr_0110	0.75	-1.0
122,147	-		Psyr_0110	0.75	-0.8
122,147	-		Psyr_0110	0.75	-0.3
122,147	-		Psyr_0110	0.75	+0.3
122,147	-		Psyr_0110	0.75	-0.8
122,147	-		Psyr_0110	0.75	+1.1
122,184	-		Psyr_0110	0.79	+0.7
122,184	-		Psyr_0110	0.79	-0.4
122,184	-		Psyr_0110	0.79	-0.4
122,187	+		Psyr_0110	0.79	+1.0
122,187	+		Psyr_0110	0.79	-0.3
122,188	-		Psyr_0110	0.80	+0.4
122,265	+		Psyr_0110	0.89	-1.2
122,315	+				-0.1
122,315	+				-0.7
122,315	+				+0.3
122,338	-				+0.3
122,367	+				-0.4
122,367	+				+0.0
122,367	+				-2.3
122,367	+				+0.0
122,367	+				-0.2
122,367	+				-2.4
122,367	+				+0.1
122,367	+				-0.0
122,367	+				+0.4
122,367	+				+0.7
122,367	+				+1.1
122,367	+				+0.2
122,367	+				+0.7
122,367	+				+1.7
122,367	+				+1.2
122,367	+				+0.2
122,367	+				+1.3
122,367	+				+0.5
122,368	-				-0.1
122,368	-				+0.2
122,368	-				+0.7
122,368	-				+0.0
122,368	-				+1.1
122,368	-				-0.8
122,368	-				-1.0
122,368	-				-0.3
122,368	-				+0.7
122,368	-				+2.1
122,368	-				-0.8
122,409	-		Psyr_0111	0.11	+0.2
122,409	-		Psyr_0111	0.11	+0.9
122,442	-		Psyr_0111	0.19	-1.0
122,447	+		Psyr_0111	0.20	-0.4
122,448	-		Psyr_0111	0.20	-1.0
122,448	-		Psyr_0111	0.20	-0.7
122,448	-		Psyr_0111	0.20	+0.6
122,517	-		Psyr_0111	0.36	-0.5
122,533	+		Psyr_0111	0.40	-0.1
122,558	+		Psyr_0111	0.45	+0.0
122,558	+		Psyr_0111	0.45	-0.4
122,558	+		Psyr_0111	0.45	+0.7
122,559	-		Psyr_0111	0.46	+0.3
122,559	-		Psyr_0111	0.46	-0.4
122,588	+		Psyr_0111	0.52	+0.3
122,589	-		Psyr_0111	0.53	+0.1
122,589	-		Psyr_0111	0.53	-0.7
122,589	-		Psyr_0111	0.53	+0.0
122,608	-		Psyr_0111	0.57	-1.3
122,617	+		Psyr_0111	0.59	-1.1
122,617	+		Psyr_0111	0.59	-0.1
122,617	+		Psyr_0111	0.59	-1.1
122,617	+		Psyr_0111	0.59	-0.7
122,618	-		Psyr_0111	0.59	-0.1
122,697	+		Psyr_0111	0.78	-0.5
122,698	-		Psyr_0111	0.78	-1.3
122,732	+		Psyr_0111	0.86	-0.3
122,733	-		Psyr_0111	0.86	-0.0
122,733	-		Psyr_0111	0.86	-1.4
122,735	+		Psyr_0111	0.86	-0.2
122,822	-				+0.3
122,838	-				-0.2
122,898	+		Psyr_0112	0.23	-0.1
122,899	-		Psyr_0112	0.23	-0.4
122,954	+		Psyr_0112	0.38	+0.5
122,954	+		Psyr_0112	0.38	+1.0
122,998	-		Psyr_0112	0.49	-0.0
122,998	-		Psyr_0112	0.49	-0.8
123,045	-		Psyr_0112	0.61	-0.2
123,045	-		Psyr_0112	0.61	-1.6
123,045	-		Psyr_0112	0.61	+0.3
123,045	-		Psyr_0112	0.61	-1.3
123,054	-		Psyr_0112	0.64	+0.3
123,068	+		Psyr_0112	0.67	-1.0
123,068	+		Psyr_0112	0.67	-0.2
123,068	+		Psyr_0112	0.67	+0.3
123,068	+		Psyr_0112	0.67	-0.7
123,069	-		Psyr_0112	0.67	+0.4
123,149	-		Psyr_0112	0.88	-0.3
123,149	-		Psyr_0112	0.88	-0.3
123,193	+				-0.2
123,193	+				-0.4
123,193	+				+1.0
123,193	+				-0.1
123,193	+				-0.2
123,193	+				-1.1
123,193	+				-2.6
123,193	+				+0.1
123,194	-				+0.4
123,194	-				+0.2
123,194	-				-0.1
123,201	+				+0.2
123,201	+				-0.3
123,201	+				+0.1
123,202	-				-0.2
123,202	-				+0.4
123,202	-				-0.4
123,220	+				-0.4
123,220	+				+1.0
123,220	+				-0.8
123,220	+				-0.5
123,221	-				+0.6
123,221	-				-0.1
123,221	-				+0.6
123,221	-				-0.5
123,233	+				-0.0
123,233	+				+0.5
123,234	-				-1.0
123,234	-				-2.0
123,234	-				+0.3
123,234	-				-0.3
123,254	+				+1.7
123,254	+				-0.1
123,255	-				+0.1
123,255	-				+0.4
123,255	-				+0.3
123,255	-				+1.1
123,255	-				-0.3
123,283	-				+1.3
123,283	-				-0.3
123,343	+				+1.7
123,343	+				+0.5
123,343	+				-1.3
123,344	-				+0.7
123,344	-				+0.4
123,344	-				-0.5
123,344	-				+0.7