Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4001

Experiment: MBOA 1.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 1.2 mM
4,764,305	-		Psyr_3999	0.73	+0.4
4,764,321	-		Psyr_3999	0.74	-0.3
4,764,348	-		Psyr_3999	0.76	+0.9
4,764,348	-		Psyr_3999	0.76	+0.2
4,764,348	-		Psyr_3999	0.76	+1.1
4,764,348	-		Psyr_3999	0.76	-0.4
4,764,413	+		Psyr_3999	0.81	-2.1
4,764,413	+		Psyr_3999	0.81	+0.1
4,764,414	-		Psyr_3999	0.81	+0.3
4,764,414	-		Psyr_3999	0.81	+0.1
4,764,414	-		Psyr_3999	0.81	+1.1
4,764,414	-		Psyr_3999	0.81	-1.5
4,764,525	+		Psyr_3999	0.90	-0.2
4,764,525	+		Psyr_3999	0.90	+0.1
4,764,525	+		Psyr_3999	0.90	+0.3
4,764,526	-		Psyr_3999	0.90	+0.5
4,764,570	+				+0.0
4,764,570	+				+0.4
4,764,571	-				+0.3
4,764,571	-				-0.8
4,764,576	+				+0.5
4,764,576	+				+0.2
4,764,576	+				+0.3
4,764,577	-				+0.1
4,764,577	-				+0.4
4,764,577	-				+0.2
4,764,591	-				+0.7
4,764,612	+				+0.0
4,764,612	+				-0.3
4,764,612	+				+0.3
4,764,612	+				+1.0
4,764,612	+				-0.7
4,764,612	+				+0.0
4,764,612	+				+0.4
4,764,612	+				-1.2
4,764,612	+				+0.4
4,764,612	+				-0.1
4,764,613	-				+0.9
4,764,613	-				+1.1
4,764,613	-				+0.1
4,764,613	-				+0.3
4,764,613	-				+1.2
4,764,613	-				+0.5
4,764,613	-				+1.0
4,764,613	-				-0.3
4,764,613	-				-0.9
4,764,613	-				+0.5
4,764,613	-				+0.4
4,764,613	-				-0.0
4,764,613	-				+0.2
4,764,613	-				-1.7
4,764,613	-				+0.4
4,764,706	+				+0.1
4,764,706	+				+0.1
4,764,707	-				+0.7
4,764,707	-				+1.0
4,764,707	-				+0.2
4,764,707	-				-3.0
4,764,708	+				+0.0
4,764,708	+				-0.1
4,764,708	+				+0.1
4,764,708	+				+0.6
4,764,708	+				-0.8
4,764,708	+				+0.3
4,764,708	+				+0.4
4,764,708	+				-0.5
4,764,708	+				-0.3
4,764,708	+				-0.2
4,764,709	-				+0.2
4,764,709	-				+0.5
4,764,709	-				-0.0
4,764,709	-				+0.4
4,764,709	-				-0.7
4,764,709	-				-2.8
4,764,709	-				+0.1
4,764,709	-				+0.1
4,764,709	-				+0.6
4,764,709	-				+0.0
4,764,710	+				+1.9
4,764,710	+				+0.8
4,764,710	+				+0.9
4,764,710	+				+0.1
4,764,710	+				-1.3
4,764,710	+				+0.2
4,764,710	+				-0.2
4,764,710	+				+0.2
4,764,710	+				+0.3
4,764,710	+				+0.1
4,764,710	+				+0.0
4,764,710	+				+0.2
4,764,711	-				-1.7
4,764,711	-				+0.7
4,764,711	-				+1.6
4,764,711	-				+0.5
4,764,711	-				+0.8
4,764,711	-				+0.3
4,764,711	-				-0.2
4,764,711	-				-0.2
4,764,711	-				-0.3
4,764,711	-				-1.5
4,764,711	-				-0.2
4,764,711	-				-0.3
4,764,711	-				-0.3
4,764,766	+				-0.6
4,764,766	+				+0.4
4,764,767	-				+0.6
4,764,774	+				+0.7
4,764,775	-				+0.5
4,764,848	+				-0.7
4,764,848	+				+1.4
4,764,848	+				-0.3
4,764,848	+				-0.7
4,764,848	+				-0.5
4,764,848	+				-0.2
4,764,848	+				-0.0
4,764,848	+				+0.1
4,764,849	-				+0.8
4,764,849	-				+3.3
4,764,849	-				-0.6
4,764,849	-				-0.1
4,764,849	-				-0.5
4,764,849	-				-1.5
4,764,849	-				-1.8
4,764,849	-				-0.5
4,764,851	-				+0.6
4,764,896	+		Psyr_4000	0.25	-2.2
4,764,897	-		Psyr_4000	0.25	+0.3
4,764,908	+		Psyr_4000	0.29	+0.5
4,764,909	-		Psyr_4000	0.30	+0.8
4,764,909	-		Psyr_4000	0.30	+0.2
4,764,926	+		Psyr_4000	0.36	+0.3
4,764,926	+		Psyr_4000	0.36	-1.6
4,764,926	+		Psyr_4000	0.36	-0.9
4,764,926	+		Psyr_4000	0.36	-0.3
4,764,926	+		Psyr_4000	0.36	-0.2
4,764,927	-		Psyr_4000	0.37	-0.9
4,764,927	-		Psyr_4000	0.37	-0.3
4,764,927	-		Psyr_4000	0.37	+1.1
4,764,927	-		Psyr_4000	0.37	+0.3
4,764,927	-		Psyr_4000	0.37	+0.1
4,764,927	-		Psyr_4000	0.37	-0.5
4,764,953	+		Psyr_4000	0.47	+0.3
4,765,028	-		Psyr_4000	0.76	+1.8
4,765,090	+				+2.3
4,765,138	+				+0.3
4,765,139	-				-1.0
4,765,169	+				+0.6
4,765,169	+				+1.0
4,765,170	-				-0.3
4,765,172	+				+0.3
4,765,173	-				+0.3
4,765,173	-				-0.7
4,765,173	-				+0.3
4,765,181	-				+0.7
4,765,183	+				+0.4
4,765,183	+				+0.1
4,765,198	+				+0.6
4,765,198	+				+0.0
4,765,198	+				-1.7
4,765,213	-				+0.6
4,765,287	+		Psyr_4001	0.10	-0.7
4,765,288	-		Psyr_4001	0.10	-0.7
4,765,390	-		Psyr_4001	0.42	-0.9
4,765,550	+				+0.6
4,765,679	+				+0.0
4,765,679	+				+0.9
4,765,679	+				-0.7
4,765,680	-				-0.3
4,765,680	-				-0.6
4,765,694	+				+1.2
4,765,729	+				-0.4
4,765,730	-				-0.1
4,765,740	-				+0.4
4,765,791	+		Psyr_4002	0.12	+0.8
4,765,791	+		Psyr_4002	0.12	-3.5
4,765,856	+		Psyr_4002	0.22	+1.0
4,765,856	+		Psyr_4002	0.22	-1.8
4,765,856	+		Psyr_4002	0.22	-0.1
4,765,857	-		Psyr_4002	0.22	-2.1
4,765,857	-		Psyr_4002	0.22	-0.0
4,765,857	-		Psyr_4002	0.22	-1.2
4,765,880	+		Psyr_4002	0.26	-2.2
4,765,880	+		Psyr_4002	0.26	-0.3
4,765,880	+		Psyr_4002	0.26	-0.4
4,765,880	+		Psyr_4002	0.26	+1.0
4,765,880	+		Psyr_4002	0.26	-0.5
4,765,881	-		Psyr_4002	0.26	-1.2
4,765,881	-		Psyr_4002	0.26	-1.8
4,765,881	-		Psyr_4002	0.26	+1.5
4,765,933	+		Psyr_4002	0.34	-0.7
4,765,933	+		Psyr_4002	0.34	+0.8
4,765,933	+		Psyr_4002	0.34	+1.0
4,765,933	+		Psyr_4002	0.34	+1.8
4,765,937	-		Psyr_4002	0.35	-0.3
4,766,092	-		Psyr_4002	0.60	+1.4
4,766,238	-		Psyr_4002	0.83	-0.7
4,766,238	-		Psyr_4002	0.83	-0.2
4,766,288	+				-0.7
4,766,288	+				+0.8
4,766,515	+		Psyr_4003	0.72	-2.7
4,766,515	+		Psyr_4003	0.72	-0.4
4,766,515	+		Psyr_4003	0.72	+0.1
4,766,517	+		Psyr_4003	0.73	+0.4
4,766,517	+		Psyr_4003	0.73	-1.1
4,766,517	+		Psyr_4003	0.73	+1.6
4,766,517	+		Psyr_4003	0.73	+0.3
4,766,517	+		Psyr_4003	0.73	-0.6
4,766,517	+		Psyr_4003	0.73	+0.3
4,766,517	+		Psyr_4003	0.73	-0.9
4,766,518	-		Psyr_4003	0.73	-0.3
4,766,565	+				-0.8
4,766,565	+				+0.3
4,766,565	+				+0.9
4,766,565	+				-0.3
4,766,566	-				-0.5
4,766,566	-				+0.2
4,766,566	-				-0.5
4,766,566	-				-0.2
4,766,566	-				-0.2