Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1578

Experiment: MBOA 1.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 1.2 mM
1,771,827	-		Psyr_1576	0.62	-0.3
1,771,827	-		Psyr_1576	0.62	+1.1
1,771,883	+		Psyr_1576	0.69	-0.6
1,772,130	+				-0.3
1,772,131	-				+0.7
1,772,131	-				-0.1
1,772,149	-				-0.8
1,772,188	+				+1.3
1,772,257	+		Psyr_1577	0.15	+2.0
1,772,258	-		Psyr_1577	0.16	+0.7
1,772,312	-		Psyr_1577	0.26	-0.7
1,772,314	-		Psyr_1577	0.26	+0.2
1,772,368	+		Psyr_1577	0.37	+0.1
1,772,369	-		Psyr_1577	0.37	-0.8
1,772,547	+		Psyr_1577	0.71	-0.4
1,772,547	+		Psyr_1577	0.71	-1.6
1,772,547	+		Psyr_1577	0.71	+0.2
1,772,547	+		Psyr_1577	0.71	-0.7
1,772,547	+		Psyr_1577	0.71	-1.2
1,772,547	+		Psyr_1577	0.71	-0.3
1,772,547	+		Psyr_1577	0.71	+0.2
1,772,547	+		Psyr_1577	0.71	+0.2
1,772,547	+		Psyr_1577	0.71	-0.3
1,772,548	-		Psyr_1577	0.71	+0.8
1,772,548	-		Psyr_1577	0.71	-0.3
1,772,548	-		Psyr_1577	0.71	-0.2
1,772,548	-		Psyr_1577	0.71	-0.4
1,772,739	+				+0.6
1,772,739	+				-1.2
1,772,739	+				-0.4
1,772,739	+				+1.8
1,772,739	+				-0.4
1,772,739	+				-1.2
1,772,739	+				+0.2
1,772,739	+				-0.0
1,772,739	+				+0.1
1,772,740	-				+0.2
1,772,740	-				-2.3
1,772,740	-				-1.1
1,772,740	-				-0.2
1,772,740	-				-0.6
1,772,740	-				+0.5
1,772,740	-				-0.1
1,772,740	-				+0.0
1,772,740	-				-0.6
1,772,740	-				-0.6
1,772,741	+				+0.5
1,772,741	+				+0.6
1,772,741	+				-0.7
1,772,741	+				+0.3
1,772,741	+				-0.1
1,772,741	+				-1.5
1,772,741	+				-0.3
1,772,742	-				-0.0
1,772,742	-				+0.1
1,772,742	-				+0.3
1,772,742	-				+0.4
1,772,742	-				-0.1
1,772,761	+				-0.1
1,772,761	+				-0.5
1,772,761	+				+0.2
1,772,762	-				-0.9
1,772,762	-				+0.6
1,772,762	-				-0.0
1,772,765	+				-1.0
1,772,765	+				-0.6
1,772,765	+				-0.5
1,772,765	+				+0.4
1,772,765	+				+0.2
1,772,766	-				-0.1
1,772,766	-				-0.9
1,772,766	-				-2.2
1,772,766	-				-1.0
1,772,769	+				-0.9
1,772,888	+		Psyr_1578	0.21	+0.5
1,772,888	+		Psyr_1578	0.21	+0.1
1,772,888	+		Psyr_1578	0.21	+0.2
1,772,889	-		Psyr_1578	0.21	-1.7
1,772,889	-		Psyr_1578	0.21	-0.2
1,772,949	+		Psyr_1578	0.29	+0.0
1,772,949	+		Psyr_1578	0.29	+1.0
1,772,949	+		Psyr_1578	0.29	-0.1
1,772,950	-		Psyr_1578	0.30	-0.4
1,772,975	+		Psyr_1578	0.33	-0.1
1,772,976	-		Psyr_1578	0.33	-1.0
1,772,976	-		Psyr_1578	0.33	+0.3
1,773,062	+		Psyr_1578	0.45	+1.4
1,773,063	-		Psyr_1578	0.45	-0.1
1,773,063	-		Psyr_1578	0.45	+0.0
1,773,063	-		Psyr_1578	0.45	+0.1
1,773,063	-		Psyr_1578	0.45	+0.1
1,773,066	+		Psyr_1578	0.46	+0.5
1,773,165	+		Psyr_1578	0.60	-0.6
1,773,166	-		Psyr_1578	0.60	-0.5
1,773,288	+		Psyr_1578	0.77	-0.7
1,773,288	+		Psyr_1578	0.77	+0.8
1,773,288	+		Psyr_1578	0.77	+0.0
1,773,288	+		Psyr_1578	0.77	+0.8
1,773,288	+		Psyr_1578	0.77	+0.5
1,773,288	+		Psyr_1578	0.77	+1.2
1,773,288	+		Psyr_1578	0.77	-1.0
1,773,288	+		Psyr_1578	0.77	+0.2
1,773,288	+		Psyr_1578	0.77	-0.1
1,773,288	+		Psyr_1578	0.77	+0.8
1,773,288	+		Psyr_1578	0.77	-0.3
1,773,288	+		Psyr_1578	0.77	+1.7
1,773,289	-		Psyr_1578	0.77	-0.9
1,773,289	-		Psyr_1578	0.77	-1.4
1,773,289	-		Psyr_1578	0.77	+1.0
1,773,289	-		Psyr_1578	0.77	+1.0
1,773,289	-		Psyr_1578	0.77	+0.8
1,773,289	-		Psyr_1578	0.77	+1.2
1,773,289	-		Psyr_1578	0.77	+0.3
1,773,289	-		Psyr_1578	0.77	-0.2
1,773,289	-		Psyr_1578	0.77	+1.3
1,773,289	-		Psyr_1578	0.77	-1.0
1,773,289	-		Psyr_1578	0.77	-2.5
1,773,349	-		Psyr_1578	0.85	-0.0
1,773,349	-		Psyr_1578	0.85	-0.6
1,773,349	-		Psyr_1578	0.85	-0.8
1,773,403	-				-1.6
1,773,411	+				+2.5
1,773,412	-				+0.0
1,773,424	-				+0.6
1,773,454	+				+0.5
1,773,454	+				-0.3
1,773,454	+				-1.4
1,773,454	+				-1.0
1,773,454	+				-0.7
1,773,454	+				+0.5
1,773,454	+				+1.0
1,773,454	+				+0.5
1,773,454	+				-0.3
1,773,454	+				+0.3
1,773,454	+				-1.5
1,773,455	-				+0.2
1,773,455	-				-0.6
1,773,455	-				+0.0
1,773,455	-				+1.0
1,773,455	-				+1.0
1,773,458	+				-0.2
1,773,458	+				-1.3
1,773,458	+				+1.0
1,773,459	-				+0.2
1,773,501	+				+0.8
1,773,501	+				-0.7
1,773,502	-				-1.1
1,773,517	+				+1.7
1,773,517	+				-0.7
1,773,517	+				+0.2
1,773,518	-				+0.1
1,773,566	+				-0.1
1,773,566	+				+0.5
1,773,567	-				-0.2
1,773,567	-				-0.1
1,773,630	+				-0.5
1,773,630	+				-0.4
1,773,631	-				+0.4
1,773,632	+				+0.8
1,773,632	+				+0.2
1,773,632	+				+1.0
1,773,633	-				-0.9
1,773,633	-				+0.9
1,773,633	-				-1.8
1,773,652	+				-1.4
1,773,669	+				-0.2
1,773,708	+				-0.2
1,773,740	-				-2.9
1,773,756	+				+0.2
1,773,756	+				-1.7
1,773,757	-				+0.2
1,773,757	-				-0.5
1,773,830	+		Psyr_1579	0.15	-0.7
1,773,830	+		Psyr_1579	0.15	+0.2
1,773,830	+		Psyr_1579	0.15	+0.0
1,773,830	+		Psyr_1579	0.15	+0.0
1,773,830	+		Psyr_1579	0.15	-1.0
1,773,831	-		Psyr_1579	0.15	-2.8
1,773,831	-		Psyr_1579	0.15	-1.0
1,773,831	-		Psyr_1579	0.15	-0.3
1,773,831	-		Psyr_1579	0.15	+0.3
1,773,831	-		Psyr_1579	0.15	-0.5
1,773,831	-		Psyr_1579	0.15	-0.6
1,773,831	-		Psyr_1579	0.15	+0.2
1,773,831	-		Psyr_1579	0.15	-0.9
1,773,831	-		Psyr_1579	0.15	+0.4
1,773,831	-		Psyr_1579	0.15	-0.8
1,773,831	-		Psyr_1579	0.15	-1.3
1,773,834	+		Psyr_1579	0.15	-1.3
1,773,835	-		Psyr_1579	0.15	-0.7
1,773,927	+		Psyr_1579	0.23	-0.2
1,773,927	+		Psyr_1579	0.23	+0.0
1,773,927	+		Psyr_1579	0.23	-1.2
1,773,939	+		Psyr_1579	0.24	-0.7
1,773,940	-		Psyr_1579	0.24	-0.2
1,773,940	-		Psyr_1579	0.24	+0.7
1,773,940	-		Psyr_1579	0.24	-2.8
1,773,940	-		Psyr_1579	0.24	-1.3
1,774,011	+		Psyr_1579	0.30	-0.7
1,774,011	+		Psyr_1579	0.30	+0.0
1,774,011	+		Psyr_1579	0.30	+0.2
1,774,012	-		Psyr_1579	0.30	-1.0
1,774,012	-		Psyr_1579	0.30	-1.0
1,774,012	-		Psyr_1579	0.30	-0.5
1,774,012	-		Psyr_1579	0.30	+1.8
1,774,012	-		Psyr_1579	0.30	+0.0
1,774,012	-		Psyr_1579	0.30	-1.2
1,774,021	+		Psyr_1579	0.31	-1.0
1,774,022	-		Psyr_1579	0.31	+0.4
1,774,022	-		Psyr_1579	0.31	+0.8
1,774,030	-		Psyr_1579	0.32	-1.3
1,774,035	+		Psyr_1579	0.32	+0.4
1,774,036	-		Psyr_1579	0.32	-0.5
1,774,036	-		Psyr_1579	0.32	-1.1
1,774,036	-		Psyr_1579	0.32	+0.7
1,774,042	+		Psyr_1579	0.33	-0.9
1,774,043	-		Psyr_1579	0.33	-0.5
1,774,043	-		Psyr_1579	0.33	-0.8
1,774,043	-		Psyr_1579	0.33	-0.2
1,774,130	+		Psyr_1579	0.40	+1.0
1,774,133	+		Psyr_1579	0.40	+0.1
1,774,134	-		Psyr_1579	0.41	-0.6
1,774,282	+		Psyr_1579	0.53	+0.4
1,774,283	-		Psyr_1579	0.53	+0.2
1,774,321	+		Psyr_1579	0.56	-0.5
1,774,321	+		Psyr_1579	0.56	+0.1
1,774,322	-		Psyr_1579	0.56	+0.7
1,774,322	-		Psyr_1579	0.56	-0.4
1,774,322	-		Psyr_1579	0.56	+0.0
1,774,322	-		Psyr_1579	0.56	+0.1
1,774,322	-		Psyr_1579	0.56	-2.5
1,774,323	+				+0.4