Experiment: MBOA 1.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0497 and Psyr_0498 are separated by 2 nucleotides Psyr_0498 and Psyr_0499 are separated by 9 nucleotides Psyr_0499 and Psyr_0500 overlap by 4 nucleotides
Psyr_0497: Psyr_0497 - LamB/YcsF, at 539,323 to 540,087
_0497
Psyr_0498: Psyr_0498 - Protein of unknown function DUF1445, at 540,090 to 540,884
_0498
Psyr_0499: Psyr_0499 - Urea amidolyase-related protein, at 540,894 to 542,498
_0499
Psyr_0500: Psyr_0500 - biotin carboxyl carrier protein / biotin carboxylase, at 542,495 to 544,228
_0500
Position (kb) 540
541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.228 kb on + strand, within Psyr_0498 at 540.228 kb on + strand, within Psyr_0498 at 540.229 kb on - strand, within Psyr_0498 at 540.528 kb on + strand, within Psyr_0498 at 540.528 kb on + strand, within Psyr_0498 at 540.870 kb on + strand at 540.870 kb on + strand at 540.870 kb on + strand at 540.870 kb on + strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.873 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.903 kb on + strand at 541.149 kb on + strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.233 kb on + strand, within Psyr_0499 at 541.234 kb on - strand, within Psyr_0499 at 541.234 kb on - strand, within Psyr_0499 at 541.234 kb on - strand, within Psyr_0499 at 541.273 kb on - strand, within Psyr_0499 at 541.370 kb on + strand, within Psyr_0499 at 541.371 kb on - strand, within Psyr_0499 at 541.371 kb on - strand, within Psyr_0499 at 541.371 kb on - strand, within Psyr_0499 at 541.371 kb on - strand, within Psyr_0499 at 541.374 kb on + strand, within Psyr_0499 at 541.569 kb on + strand, within Psyr_0499 at 541.569 kb on + strand, within Psyr_0499 at 541.570 kb on - strand, within Psyr_0499 at 541.848 kb on + strand, within Psyr_0499 at 541.849 kb on - strand, within Psyr_0499 at 541.865 kb on - strand, within Psyr_0499 at 541.917 kb on + strand, within Psyr_0499 at 541.917 kb on + strand, within Psyr_0499 at 541.918 kb on - strand, within Psyr_0499 at 541.918 kb on - strand, within Psyr_0499 at 541.918 kb on - strand, within Psyr_0499 at 542.385 kb on + strand at 542.385 kb on + strand at 542.385 kb on + strand at 542.385 kb on + strand at 542.386 kb on - strand at 542.539 kb on + strand at 542.669 kb on + strand, within Psyr_0500 at 542.669 kb on + strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.670 kb on - strand, within Psyr_0500 at 542.854 kb on + strand, within Psyr_0500 at 542.855 kb on - strand, within Psyr_0500 at 542.855 kb on - strand, within Psyr_0500 at 542.855 kb on - strand, within Psyr_0500 at 543.227 kb on + strand, within Psyr_0500 at 543.227 kb on + strand, within Psyr_0500 at 543.228 kb on - strand, within Psyr_0500 at 543.293 kb on + strand, within Psyr_0500 at 543.294 kb on - strand, within Psyr_0500 at 543.294 kb on - strand, within Psyr_0500
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 1.2 mM remove 540,228 + Psyr_0498 0.17 +1.1 540,228 + Psyr_0498 0.17 +1.8 540,229 - Psyr_0498 0.17 +0.6 540,528 + Psyr_0498 0.55 +0.6 540,528 + Psyr_0498 0.55 -0.3 540,870 + -1.0 540,870 + -1.0 540,870 + +1.3 540,870 + -0.7 540,871 - +1.5 540,871 - +1.4 540,871 - -0.5 540,871 - +0.8 540,871 - +0.7 540,871 - +0.1 540,871 - -0.3 540,871 - -1.3 540,871 - +0.2 540,871 - +1.1 540,873 + +0.2 540,880 + +0.6 540,880 + -0.4 540,880 + +1.2 540,880 + -0.2 540,880 + +0.7 540,880 + -0.6 540,880 + +0.4 540,880 + +0.7 540,880 + +0.3 540,880 + -2.0 540,881 - -0.5 540,881 - -0.3 540,881 - +0.7 540,881 - -0.2 540,881 - +1.0 540,881 - +1.2 540,881 - -0.9 540,881 - -0.0 540,881 - -0.3 540,882 + -1.3 540,882 + -0.2 540,882 + +0.2 540,883 - -0.8 540,883 - +0.4 540,903 + -0.6 541,149 + Psyr_0499 0.16 -0.7 541,150 - Psyr_0499 0.16 +0.2 541,150 - Psyr_0499 0.16 -1.1 541,150 - Psyr_0499 0.16 -0.3 541,150 - Psyr_0499 0.16 -0.5 541,150 - Psyr_0499 0.16 +0.5 541,233 + Psyr_0499 0.21 +0.9 541,234 - Psyr_0499 0.21 +0.9 541,234 - Psyr_0499 0.21 -1.1 541,234 - Psyr_0499 0.21 -0.0 541,273 - Psyr_0499 0.24 -0.6 541,370 + Psyr_0499 0.30 +1.0 541,371 - Psyr_0499 0.30 +0.5 541,371 - Psyr_0499 0.30 -0.2 541,371 - Psyr_0499 0.30 -0.8 541,371 - Psyr_0499 0.30 +0.8 541,374 + Psyr_0499 0.30 -1.0 541,569 + Psyr_0499 0.42 +0.8 541,569 + Psyr_0499 0.42 +0.2 541,570 - Psyr_0499 0.42 -0.1 541,848 + Psyr_0499 0.59 +0.9 541,849 - Psyr_0499 0.60 -0.5 541,865 - Psyr_0499 0.60 -0.4 541,917 + Psyr_0499 0.64 -0.0 541,917 + Psyr_0499 0.64 -1.4 541,918 - Psyr_0499 0.64 +0.6 541,918 - Psyr_0499 0.64 +1.1 541,918 - Psyr_0499 0.64 -0.5 542,385 + -0.4 542,385 + -0.3 542,385 + -0.6 542,385 + +0.3 542,386 - -0.6 542,539 + +0.5 542,669 + Psyr_0500 0.10 +0.2 542,669 + Psyr_0500 0.10 -0.7 542,670 - Psyr_0500 0.10 -0.3 542,670 - Psyr_0500 0.10 +0.6 542,670 - Psyr_0500 0.10 +0.8 542,670 - Psyr_0500 0.10 +1.1 542,670 - Psyr_0500 0.10 +1.3 542,670 - Psyr_0500 0.10 -1.1 542,854 + Psyr_0500 0.21 -0.2 542,855 - Psyr_0500 0.21 +1.1 542,855 - Psyr_0500 0.21 -0.3 542,855 - Psyr_0500 0.21 -0.1 543,227 + Psyr_0500 0.42 -0.7 543,227 + Psyr_0500 0.42 +0.2 543,228 - Psyr_0500 0.42 +0.6 543,293 + Psyr_0500 0.46 -0.3 543,294 - Psyr_0500 0.46 -0.7 543,294 - Psyr_0500 0.46 +0.4
Or see this region's nucleotide sequence