Experiment: MBOA 1.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0451 and Psyr_0452 are separated by 122 nucleotides Psyr_0452 and Psyr_0453 are separated by 106 nucleotides Psyr_0453 and Psyr_0454 are separated by 131 nucleotides
Psyr_0451: Psyr_0451 - regulatory protein, LysR:LysR, substrate-binding protein, at 486,927 to 487,853
_0451
Psyr_0452: Psyr_0452 - HylII, at 487,976 to 488,590
_0452
Psyr_0453: Psyr_0453 - 16S rRNA m(3)U-1498 methyltransferase, at 488,697 to 489,416
_0453
Psyr_0454: Psyr_0454 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme, at 489,548 to 490,954
_0454
Position (kb) 488
489
490 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 487.752 kb on - strand, within Psyr_0451 at 487.752 kb on - strand, within Psyr_0451 at 487.813 kb on - strand at 487.813 kb on - strand at 487.865 kb on + strand at 487.872 kb on - strand at 487.872 kb on - strand at 487.894 kb on + strand at 487.894 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.904 kb on + strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.905 kb on - strand at 487.947 kb on + strand at 487.947 kb on + strand at 487.947 kb on + strand at 487.948 kb on - strand at 487.956 kb on + strand at 487.969 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.979 kb on + strand at 487.980 kb on - strand at 487.980 kb on - strand at 487.980 kb on - strand at 487.980 kb on - strand at 487.982 kb on + strand at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.108 kb on + strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.109 kb on - strand, within Psyr_0452 at 488.132 kb on + strand, within Psyr_0452 at 488.133 kb on - strand, within Psyr_0452 at 488.133 kb on - strand, within Psyr_0452 at 488.133 kb on - strand, within Psyr_0452 at 488.150 kb on + strand, within Psyr_0452 at 488.210 kb on + strand, within Psyr_0452 at 488.211 kb on - strand, within Psyr_0452 at 488.211 kb on - strand, within Psyr_0452 at 488.211 kb on - strand, within Psyr_0452 at 488.211 kb on - strand, within Psyr_0452 at 488.211 kb on - strand, within Psyr_0452 at 488.231 kb on + strand, within Psyr_0452 at 488.231 kb on + strand, within Psyr_0452 at 488.231 kb on + strand, within Psyr_0452 at 488.231 kb on + strand, within Psyr_0452 at 488.232 kb on - strand, within Psyr_0452 at 488.232 kb on - strand, within Psyr_0452 at 488.328 kb on + strand, within Psyr_0452 at 488.328 kb on + strand, within Psyr_0452 at 488.329 kb on - strand, within Psyr_0452 at 488.369 kb on + strand, within Psyr_0452 at 488.370 kb on - strand, within Psyr_0452 at 488.370 kb on - strand, within Psyr_0452 at 488.468 kb on + strand, within Psyr_0452 at 488.468 kb on + strand, within Psyr_0452 at 488.468 kb on + strand, within Psyr_0452 at 488.468 kb on + strand, within Psyr_0452 at 488.469 kb on - strand, within Psyr_0452 at 488.579 kb on + strand at 488.579 kb on + strand at 488.579 kb on + strand at 488.580 kb on - strand at 488.580 kb on - strand at 489.098 kb on + strand, within Psyr_0453 at 489.099 kb on - strand, within Psyr_0453 at 489.099 kb on - strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.549 kb on + strand at 489.678 kb on + strand at 489.679 kb on - strand at 489.679 kb on - strand at 489.694 kb on - strand, within Psyr_0454 at 489.694 kb on - strand, within Psyr_0454 at 489.694 kb on - strand, within Psyr_0454 at 489.694 kb on - strand, within Psyr_0454 at 489.694 kb on - strand, within Psyr_0454 at 489.991 kb on - strand, within Psyr_0454 at 489.991 kb on - strand, within Psyr_0454 at 489.991 kb on - strand, within Psyr_0454 at 489.991 kb on - strand, within Psyr_0454 at 490.035 kb on + strand, within Psyr_0454 at 490.035 kb on + strand, within Psyr_0454 at 490.048 kb on - strand, within Psyr_0454 at 490.087 kb on - strand, within Psyr_0454 at 490.087 kb on - strand, within Psyr_0454 at 490.245 kb on + strand, within Psyr_0454 at 490.245 kb on + strand, within Psyr_0454 at 490.257 kb on + strand, within Psyr_0454 at 490.257 kb on + strand, within Psyr_0454 at 490.257 kb on + strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.402 kb on - strand, within Psyr_0454
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 1.2 mM remove 487,752 - Psyr_0451 0.89 -1.2 487,752 - Psyr_0451 0.89 +1.0 487,813 - -0.1 487,813 - +2.0 487,865 + -0.3 487,872 - +1.0 487,872 - +0.4 487,894 + -0.4 487,894 + -0.2 487,904 + -0.6 487,904 + +1.0 487,904 + -0.5 487,904 + -0.0 487,904 + +0.6 487,904 + -0.8 487,904 + -2.1 487,904 + -0.6 487,904 + +1.3 487,905 - -1.3 487,905 - +0.8 487,905 - +0.4 487,905 - -0.0 487,905 - -0.3 487,905 - -0.3 487,905 - -0.3 487,905 - -0.7 487,905 - +0.4 487,905 - +1.2 487,905 - -0.3 487,905 - -0.2 487,905 - +1.0 487,905 - -0.2 487,947 + +1.5 487,947 + +0.8 487,947 + +0.6 487,948 - -0.6 487,956 + -0.5 487,969 + -0.5 487,979 + -0.9 487,979 + -0.5 487,979 + +0.6 487,979 + -0.3 487,979 + +0.9 487,979 + +0.7 487,979 + +1.0 487,980 - +0.4 487,980 - +0.1 487,980 - -0.4 487,980 - +1.0 487,982 + -0.5 488,108 + Psyr_0452 0.21 -0.4 488,108 + Psyr_0452 0.21 +1.2 488,108 + Psyr_0452 0.21 -0.3 488,108 + Psyr_0452 0.21 -0.5 488,108 + Psyr_0452 0.21 -1.2 488,108 + Psyr_0452 0.21 -0.7 488,108 + Psyr_0452 0.21 +0.1 488,108 + Psyr_0452 0.21 -0.4 488,108 + Psyr_0452 0.21 -0.5 488,108 + Psyr_0452 0.21 +0.2 488,108 + Psyr_0452 0.21 -0.9 488,108 + Psyr_0452 0.21 +0.1 488,109 - Psyr_0452 0.22 -1.0 488,109 - Psyr_0452 0.22 +0.2 488,109 - Psyr_0452 0.22 +0.6 488,109 - Psyr_0452 0.22 -0.1 488,109 - Psyr_0452 0.22 -1.3 488,109 - Psyr_0452 0.22 +0.0 488,109 - Psyr_0452 0.22 -0.6 488,109 - Psyr_0452 0.22 -0.7 488,109 - Psyr_0452 0.22 +0.4 488,109 - Psyr_0452 0.22 -0.2 488,109 - Psyr_0452 0.22 -0.0 488,109 - Psyr_0452 0.22 -0.1 488,109 - Psyr_0452 0.22 -0.4 488,109 - Psyr_0452 0.22 -0.9 488,109 - Psyr_0452 0.22 -1.9 488,109 - Psyr_0452 0.22 -0.8 488,109 - Psyr_0452 0.22 +0.7 488,132 + Psyr_0452 0.25 -1.2 488,133 - Psyr_0452 0.26 -0.5 488,133 - Psyr_0452 0.26 -0.5 488,133 - Psyr_0452 0.26 -0.5 488,150 + Psyr_0452 0.28 -0.6 488,210 + Psyr_0452 0.38 -0.3 488,211 - Psyr_0452 0.38 +1.6 488,211 - Psyr_0452 0.38 -0.8 488,211 - Psyr_0452 0.38 -0.9 488,211 - Psyr_0452 0.38 +0.3 488,211 - Psyr_0452 0.38 -3.0 488,231 + Psyr_0452 0.41 -0.6 488,231 + Psyr_0452 0.41 +1.3 488,231 + Psyr_0452 0.41 -0.6 488,231 + Psyr_0452 0.41 +0.1 488,232 - Psyr_0452 0.42 -0.0 488,232 - Psyr_0452 0.42 -0.2 488,328 + Psyr_0452 0.57 +1.0 488,328 + Psyr_0452 0.57 -0.5 488,329 - Psyr_0452 0.57 +0.2 488,369 + Psyr_0452 0.64 +0.3 488,370 - Psyr_0452 0.64 -2.2 488,370 - Psyr_0452 0.64 +0.7 488,468 + Psyr_0452 0.80 +0.4 488,468 + Psyr_0452 0.80 -1.2 488,468 + Psyr_0452 0.80 -1.0 488,468 + Psyr_0452 0.80 -0.1 488,469 - Psyr_0452 0.80 -0.6 488,579 + +0.1 488,579 + +1.0 488,579 + -0.0 488,580 - -0.6 488,580 - +0.4 489,098 + Psyr_0453 0.56 +0.6 489,099 - Psyr_0453 0.56 +1.1 489,099 - Psyr_0453 0.56 -0.1 489,340 + Psyr_0453 0.89 +1.8 489,340 + Psyr_0453 0.89 +1.1 489,340 + Psyr_0453 0.89 +0.7 489,340 + Psyr_0453 0.89 -0.0 489,340 + Psyr_0453 0.89 +0.8 489,340 + Psyr_0453 0.89 +0.4 489,340 + Psyr_0453 0.89 +2.4 489,340 + Psyr_0453 0.89 +2.3 489,341 - Psyr_0453 0.89 +1.7 489,341 - Psyr_0453 0.89 -0.2 489,341 - Psyr_0453 0.89 +0.8 489,341 - Psyr_0453 0.89 -0.3 489,341 - Psyr_0453 0.89 +1.0 489,341 - Psyr_0453 0.89 +0.1 489,549 + -0.2 489,678 + +2.2 489,679 - -2.5 489,679 - -0.6 489,694 - Psyr_0454 0.10 +0.1 489,694 - Psyr_0454 0.10 -0.4 489,694 - Psyr_0454 0.10 -1.8 489,694 - Psyr_0454 0.10 -0.5 489,694 - Psyr_0454 0.10 -0.4 489,991 - Psyr_0454 0.31 -0.1 489,991 - Psyr_0454 0.31 -0.3 489,991 - Psyr_0454 0.31 -0.9 489,991 - Psyr_0454 0.31 -3.0 490,035 + Psyr_0454 0.35 +2.2 490,035 + Psyr_0454 0.35 -0.1 490,048 - Psyr_0454 0.36 -0.6 490,087 - Psyr_0454 0.38 +1.0 490,087 - Psyr_0454 0.38 -1.6 490,245 + Psyr_0454 0.50 -0.2 490,245 + Psyr_0454 0.50 +0.5 490,257 + Psyr_0454 0.50 +0.2 490,257 + Psyr_0454 0.50 -0.5 490,257 + Psyr_0454 0.50 +0.8 490,258 - Psyr_0454 0.50 -1.0 490,258 - Psyr_0454 0.50 -0.2 490,258 - Psyr_0454 0.50 -0.0 490,258 - Psyr_0454 0.50 +0.1 490,258 - Psyr_0454 0.50 -2.2 490,258 - Psyr_0454 0.50 -0.7 490,402 - Psyr_0454 0.61 -0.1
Or see this region's nucleotide sequence