Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4868

Experiment: MBOA 1.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 1.2 mM
5,777,436	+		Psyr_4867	0.77	+0.2
5,777,436	+		Psyr_4867	0.77	+0.3
5,777,436	+		Psyr_4867	0.77	+0.5
5,777,437	-		Psyr_4867	0.77	-2.0
5,777,437	-		Psyr_4867	0.77	-1.0
5,777,437	-		Psyr_4867	0.77	-2.7
5,777,437	-		Psyr_4867	0.77	-1.8
5,777,437	-		Psyr_4867	0.77	-1.1
5,777,437	-		Psyr_4867	0.77	-2.1
5,777,487	+		Psyr_4867	0.80	+1.0
5,777,487	+		Psyr_4867	0.80	-1.1
5,777,487	+		Psyr_4867	0.80	+0.2
5,777,487	+		Psyr_4867	0.80	+0.1
5,777,487	+		Psyr_4867	0.80	+1.9
5,777,487	+		Psyr_4867	0.80	+1.0
5,777,487	+		Psyr_4867	0.80	-0.5
5,777,488	-		Psyr_4867	0.81	-3.2
5,777,488	-		Psyr_4867	0.81	-3.3
5,777,488	-		Psyr_4867	0.81	+0.2
5,777,547	+		Psyr_4867	0.85	+0.0
5,777,548	-		Psyr_4867	0.85	-3.7
5,777,548	-		Psyr_4867	0.85	-1.1
5,777,548	-		Psyr_4867	0.85	-1.0
5,777,548	-		Psyr_4867	0.85	-0.7
5,777,550	+		Psyr_4867	0.85	+1.0
5,777,550	+		Psyr_4867	0.85	+0.1
5,777,550	+		Psyr_4867	0.85	+0.5
5,777,550	+		Psyr_4867	0.85	+1.6
5,777,550	+		Psyr_4867	0.85	+1.9
5,777,550	+		Psyr_4867	0.85	+0.0
5,777,550	+		Psyr_4867	0.85	-0.2
5,777,551	-		Psyr_4867	0.85	-0.3
5,777,551	-		Psyr_4867	0.85	-2.1
5,777,551	-		Psyr_4867	0.85	-1.0
5,777,551	-		Psyr_4867	0.85	-0.7
5,777,551	-		Psyr_4867	0.85	-2.9
5,777,551	-		Psyr_4867	0.85	-0.5
5,777,551	-		Psyr_4867	0.85	-0.5
5,777,551	-		Psyr_4867	0.85	-1.8
5,777,551	-		Psyr_4867	0.85	-0.7
5,777,551	-		Psyr_4867	0.85	-1.3
5,777,551	-		Psyr_4867	0.85	-0.5
5,777,551	-		Psyr_4867	0.85	-1.8
5,777,554	+		Psyr_4867	0.85	-0.4
5,777,555	-		Psyr_4867	0.85	-1.1
5,777,564	+		Psyr_4867	0.86	+0.4
5,777,565	-		Psyr_4867	0.86	-2.1
5,777,565	-		Psyr_4867	0.86	-0.8
5,777,565	-		Psyr_4867	0.86	-1.5
5,777,568	+		Psyr_4867	0.86	-0.3
5,777,568	+		Psyr_4867	0.86	-1.4
5,777,568	+		Psyr_4867	0.86	-0.4
5,777,569	-		Psyr_4867	0.86	-2.1
5,777,569	-		Psyr_4867	0.86	-2.7
5,777,569	-		Psyr_4867	0.86	+0.2
5,777,746	+				-0.8
5,777,746	+				+1.1
5,777,747	-				-3.0
5,777,747	-				-3.3
5,777,747	-				-1.2
5,777,752	+				+1.1
5,777,752	+				+0.8
5,777,752	+				-0.5
5,777,752	+				-0.7
5,777,752	+				+1.4
5,777,752	+				+0.3
5,777,752	+				+0.6
5,777,752	+				-0.5
5,777,752	+				+0.4
5,777,752	+				+0.5
5,777,753	-				-0.0
5,777,753	-				+0.4
5,777,753	-				-2.3
5,777,753	-				-1.4
5,777,753	-				-2.3
5,777,753	-				+0.8
5,777,753	-				+1.6
5,777,753	-				-0.1
5,777,756	+				+0.4
5,777,756	+				-0.4
5,777,756	+				+0.1
5,777,756	+				+0.2
5,777,756	+				-0.5
5,777,756	+				+0.5
5,777,757	-				-0.7
5,777,757	-				-2.0
5,777,769	+				+0.7
5,777,770	-				-0.1
5,777,770	-				-1.3
5,777,818	+				+1.4
5,777,818	+				-0.1
5,777,818	+				+0.1
5,777,818	+				-0.0
5,777,818	+				+0.0
5,777,818	+				+0.4
5,777,819	-				-1.0
5,777,819	-				+0.6
5,777,819	-				-1.1
5,777,819	-				-2.4
5,777,819	-				-1.7
5,777,819	-				-1.9
5,777,819	-				-0.5
5,777,819	-				-0.8
5,777,819	-				-1.0
5,777,819	-				+0.5
5,777,819	-				-0.6
5,777,819	-				+0.3
5,777,819	-				+0.3
5,777,819	-				-3.3
5,777,909	+				-0.2
5,777,911	+				-0.4
5,777,911	+				+1.0
5,777,912	-				-0.5
5,777,917	+				-0.4
5,777,918	-				-0.5
5,777,918	-				+3.0
5,778,027	+				+1.3
5,778,169	+				+0.2
5,778,169	+				+1.0
5,778,170	-				-2.0
5,778,170	-				-0.2
5,778,215	+				+2.1
5,778,215	+				+0.7
5,778,216	-				-1.8
5,778,233	+				+0.3
5,778,234	-				-1.5
5,778,419	+				+0.5
5,778,419	+				-0.0
5,778,419	+				+1.4
5,778,420	-				+1.5
5,778,442	+				+0.4
5,778,442	+				-0.1
5,778,442	+				-0.8
5,778,443	-				-1.4
5,778,443	-				+0.5
5,778,497	+		Psyr_4868	0.11	-0.3
5,778,498	-		Psyr_4868	0.11	+0.3
5,778,528	+		Psyr_4868	0.13	-0.1
5,778,528	+		Psyr_4868	0.13	+0.0
5,778,529	-		Psyr_4868	0.13	+0.9
5,778,541	+		Psyr_4868	0.14	+3.4
5,778,723	+		Psyr_4868	0.27	-0.8
5,778,723	+		Psyr_4868	0.27	-0.7
5,778,723	+		Psyr_4868	0.27	+0.8
5,778,723	+		Psyr_4868	0.27	-0.1
5,778,723	+		Psyr_4868	0.27	+0.0
5,778,724	-		Psyr_4868	0.27	-0.2
5,778,724	-		Psyr_4868	0.27	+1.8
5,778,794	+		Psyr_4868	0.32	+1.2
5,778,794	+		Psyr_4868	0.32	-0.3
5,778,794	+		Psyr_4868	0.32	-0.6
5,778,794	+		Psyr_4868	0.32	-1.1
5,778,794	+		Psyr_4868	0.32	+0.0
5,778,794	+		Psyr_4868	0.32	+0.7
5,778,881	+		Psyr_4868	0.39	-0.3
5,778,882	-		Psyr_4868	0.39	-0.1
5,778,882	-		Psyr_4868	0.39	-1.1
5,778,905	+		Psyr_4868	0.41	-0.5
5,778,905	+		Psyr_4868	0.41	-0.4
5,778,906	-		Psyr_4868	0.41	+0.7
5,779,044	-		Psyr_4868	0.51	+0.2
5,779,051	-		Psyr_4868	0.51	+1.3
5,779,156	+		Psyr_4868	0.59	+1.7
5,779,156	+		Psyr_4868	0.59	-1.1
5,779,156	+		Psyr_4868	0.59	+0.0
5,779,156	+		Psyr_4868	0.59	-1.3
5,779,157	-		Psyr_4868	0.59	+1.4
5,779,157	-		Psyr_4868	0.59	-0.6
5,779,157	-		Psyr_4868	0.59	+0.5
5,779,322	+		Psyr_4868	0.71	+2.0
5,779,322	+		Psyr_4868	0.71	-0.4
5,779,322	+		Psyr_4868	0.71	+0.3
5,779,322	+		Psyr_4868	0.71	+1.4
5,779,322	+		Psyr_4868	0.71	+0.4
5,779,322	+		Psyr_4868	0.71	+0.2
5,779,322	+		Psyr_4868	0.71	+0.1
5,779,322	+		Psyr_4868	0.71	-0.1
5,779,322	+		Psyr_4868	0.71	+0.7
5,779,322	+		Psyr_4868	0.71	-1.5
5,779,323	-		Psyr_4868	0.71	-0.7
5,779,323	-		Psyr_4868	0.71	+0.8
5,779,323	-		Psyr_4868	0.71	+0.3
5,779,323	-		Psyr_4868	0.71	+0.0
5,779,323	-		Psyr_4868	0.71	-0.7
5,779,323	-		Psyr_4868	0.71	-0.1
5,779,323	-		Psyr_4868	0.71	-0.8
5,779,323	-		Psyr_4868	0.71	-1.0
5,779,323	-		Psyr_4868	0.71	-0.4
5,779,323	-		Psyr_4868	0.71	-0.7
5,779,323	-		Psyr_4868	0.71	-0.2
5,779,323	-		Psyr_4868	0.71	+0.2
5,779,323	-		Psyr_4868	0.71	-1.2
5,779,323	-		Psyr_4868	0.71	+0.3
5,779,323	-		Psyr_4868	0.71	+1.5
5,779,361	-		Psyr_4868	0.74	-0.1
5,779,401	+		Psyr_4868	0.77	-0.1
5,779,401	+		Psyr_4868	0.77	+0.6
5,779,401	+		Psyr_4868	0.77	+0.3
5,779,530	-		Psyr_4868	0.86	+0.6
5,779,610	+				+1.4
5,779,610	+				-0.3
5,779,610	+				+0.9
5,779,610	+				-0.4
5,779,610	+				-0.7
5,779,610	+				-0.2
5,779,611	-				-0.8
5,779,611	-				+0.7
5,779,611	-				+1.0
5,779,611	-				+0.6
5,779,611	-				+0.1
5,779,611	-				-1.4
5,779,611	-				+0.6
5,779,611	-				+0.8
5,779,611	-				+2.0
5,779,611	-				-1.7
5,779,611	-				-1.1
5,779,625	+				-1.1
5,779,625	+				-0.0
5,779,625	+				-0.3
5,779,625	+				+0.5
5,779,625	+				-1.4
5,779,625	+				-3.5
5,779,626	-				+0.0
5,779,648	+				-0.1
5,779,649	-				-0.6
5,779,649	-				-0.7
5,779,698	-				-0.6
5,779,706	+				-1.8
5,779,715	-				-1.0
5,779,843	+				+0.7
5,779,843	+				+2.6
5,779,843	+				-1.0
5,779,843	+				+0.5
5,779,844	-				+2.2
5,779,844	-				+0.7
5,779,929	+				-0.6
5,779,929	+				-0.1
5,779,929	+				-0.1
5,779,930	-				-0.2
5,779,930	-				-0.2
5,779,942	-				+2.2
5,779,959	+				+0.7
5,779,960	-				-0.9
5,779,960	-				-0.4
5,779,977	+				+1.3
5,779,978	-				-0.6
5,779,978	-				-0.3
5,779,986	+				-1.1
5,779,986	+				+0.4
5,779,987	-				+0.4
5,779,987	-				-0.3
5,780,065	+				+1.3
5,780,065	+				-2.0
5,780,065	+				-0.8
5,780,066	-				-0.3
5,780,066	-				+1.9
5,780,075	+				-1.0
5,780,075	+				+0.7
5,780,075	+				-0.1
5,780,075	+				+0.4
5,780,075	+				+0.3
5,780,076	-				-0.4
5,780,076	-				+0.5
5,780,076	-				-0.4
5,780,148	+				+0.1
5,780,148	+				-1.1
5,780,148	+				+1.0
5,780,148	+				+0.8
5,780,149	-				-0.3
5,780,149	-				+0.6
5,780,299	+		Psyr_4869	0.22	-1.3
5,780,300	-		Psyr_4869	0.22	+0.2
5,780,300	-		Psyr_4869	0.22	-0.0
5,780,300	-		Psyr_4869	0.22	-1.1
5,780,341	+		Psyr_4869	0.28	+0.4
5,780,497	+		Psyr_4869	0.51	-2.6
5,780,497	+		Psyr_4869	0.51	-0.2
5,780,497	+		Psyr_4869	0.51	+1.0
5,780,497	+		Psyr_4869	0.51	-0.4
5,780,497	+		Psyr_4869	0.51	-0.8
5,780,497	+		Psyr_4869	0.51	+0.5
5,780,497	+		Psyr_4869	0.51	-0.9
5,780,498	-		Psyr_4869	0.51	+0.2
5,780,498	-		Psyr_4869	0.51	-0.1
5,780,498	-		Psyr_4869	0.51	-1.0
5,780,498	-		Psyr_4869	0.51	-0.5
5,780,498	-		Psyr_4869	0.51	-1.3
5,780,498	-		Psyr_4869	0.51	+0.8
5,780,498	-		Psyr_4869	0.51	+1.8
5,780,498	-		Psyr_4869	0.51	+0.1
5,780,651	+		Psyr_4869	0.74	-0.3
5,780,651	+		Psyr_4869	0.74	-1.1
5,780,652	-		Psyr_4869	0.74	-1.5
5,780,657	+		Psyr_4869	0.75	-0.7
5,780,657	+		Psyr_4869	0.75	+0.8
5,780,657	+		Psyr_4869	0.75	+0.4
5,780,657	+		Psyr_4869	0.75	-0.1
5,780,657	+		Psyr_4869	0.75	-0.4
5,780,657	+		Psyr_4869	0.75	-0.1
5,780,658	-		Psyr_4869	0.75	-1.1
5,780,658	-		Psyr_4869	0.75	+0.7
5,780,658	-		Psyr_4869	0.75	+0.0
5,780,658	-		Psyr_4869	0.75	-1.7
5,780,658	-		Psyr_4869	0.75	+0.0
5,780,658	-		Psyr_4869	0.75	-0.8
5,780,658	-		Psyr_4869	0.75	-1.3
5,780,658	-		Psyr_4869	0.75	-0.2
5,780,692	+		Psyr_4869	0.80	+0.4
5,780,692	+		Psyr_4869	0.80	+0.0
5,780,692	+		Psyr_4869	0.80	-0.1
5,780,692	+		Psyr_4869	0.80	+1.8
5,780,693	-		Psyr_4869	0.80	-0.2
5,780,693	-		Psyr_4869	0.80	-0.3
5,780,693	-		Psyr_4869	0.80	+0.2
5,780,693	-		Psyr_4869	0.80	-1.0