Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1433

Experiment: MBOA 1.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 1.2 mM
1,620,556	+		Psyr_1431	0.70	+2.4
1,620,556	+		Psyr_1431	0.70	-0.7
1,620,557	-		Psyr_1431	0.70	+0.3
1,620,557	-		Psyr_1431	0.70	+0.3
1,620,557	-		Psyr_1431	0.70	+0.9
1,620,559	+		Psyr_1431	0.71	-0.8
1,620,559	+		Psyr_1431	0.71	-0.7
1,620,560	-		Psyr_1431	0.71	-0.5
1,620,673	+				+1.1
1,620,673	+				-0.5
1,620,673	+				+0.3
1,620,673	+				+0.1
1,620,674	-				+0.1
1,620,674	-				+1.1
1,620,674	-				+0.1
1,620,674	-				-1.2
1,620,674	-				+0.3
1,620,727	-				-0.3
1,620,799	+				+0.3
1,620,799	+				-0.6
1,620,800	-				+1.0
1,620,800	-				+0.1
1,620,954	+				+0.1
1,620,954	+				-0.6
1,620,954	+				+0.2
1,620,954	+				+0.0
1,620,954	+				-1.1
1,620,954	+				-0.5
1,620,954	+				+0.1
1,620,955	-				+0.9
1,620,955	-				-1.3
1,620,958	+				+2.0
1,620,958	+				-0.1
1,620,958	+				+0.4
1,620,959	-				+1.1
1,620,959	-				-0.0
1,620,959	-				-1.2
1,620,959	-				+0.5
1,620,972	+		Psyr_1432	0.11	-0.4
1,621,048	+		Psyr_1432	0.35	+0.8
1,621,113	-		Psyr_1432	0.54	-0.1
1,621,113	-		Psyr_1432	0.54	+1.3
1,621,161	+		Psyr_1432	0.69	-0.2
1,621,162	-		Psyr_1432	0.69	-1.0
1,621,214	+		Psyr_1432	0.85	-0.1
1,621,214	+		Psyr_1432	0.85	+1.8
1,621,214	+		Psyr_1432	0.85	+0.2
1,621,214	+		Psyr_1432	0.85	+0.6
1,621,214	+		Psyr_1432	0.85	+0.2
1,621,214	+		Psyr_1432	0.85	-1.3
1,621,214	+		Psyr_1432	0.85	+0.1
1,621,215	-		Psyr_1432	0.86	-0.2
1,621,215	-		Psyr_1432	0.86	-0.3
1,621,215	-		Psyr_1432	0.86	+0.1
1,621,215	-		Psyr_1432	0.86	+0.5
1,621,215	-		Psyr_1432	0.86	-0.2
1,621,215	-		Psyr_1432	0.86	+0.0
1,621,215	-		Psyr_1432	0.86	+0.1
1,621,215	-		Psyr_1432	0.86	-1.0
1,621,215	-		Psyr_1432	0.86	-0.0
1,621,216	+		Psyr_1432	0.86	+0.4
1,621,216	+		Psyr_1432	0.86	+0.6
1,621,216	+		Psyr_1432	0.86	+0.8
1,621,216	+		Psyr_1432	0.86	-0.2
1,621,216	+		Psyr_1432	0.86	-0.2
1,621,216	+		Psyr_1432	0.86	-1.7
1,621,217	-		Psyr_1432	0.86	-0.7
1,621,217	-		Psyr_1432	0.86	-1.1
1,621,217	-		Psyr_1432	0.86	+0.3
1,621,217	-		Psyr_1432	0.86	-0.2
1,621,217	-		Psyr_1432	0.86	+0.5
1,621,217	-		Psyr_1432	0.86	-1.1
1,621,217	-		Psyr_1432	0.86	-1.2
1,621,217	-		Psyr_1432	0.86	-2.2
1,621,217	-		Psyr_1432	0.86	-1.2
1,621,260	-				+1.1
1,621,289	+				+1.1
1,621,289	+				-1.3
1,621,290	-				-0.1
1,621,293	+				+0.5
1,621,293	+				+0.1
1,621,293	+				+0.6
1,621,294	-				+0.4
1,621,294	-				+0.8
1,621,349	+				+0.6
1,621,404	+				-0.5
1,621,404	+				+0.1
1,621,405	-				-2.0
1,621,405	-				-0.4
1,621,446	+				+0.9
1,621,446	+				-1.9
1,621,446	+				-0.2
1,621,447	-				+1.8
1,621,472	-				-0.5
1,621,480	+				+0.4
1,621,481	-				+0.4
1,621,483	+				-0.1
1,621,483	+				-0.3
1,621,483	+				+0.3
1,621,484	-				-2.2
1,621,484	-				+0.1
1,621,484	-				-0.3
1,621,484	-				-0.1
1,621,484	-				+0.0
1,621,596	-				-1.2
1,621,626	+				+0.9
1,621,626	+				+1.4
1,621,626	+				-0.4
1,621,626	+				+0.4
1,621,626	+				-1.1
1,621,627	-				+2.5
1,621,627	-				+0.7
1,621,627	-				+0.9
1,621,671	-				+0.4
1,621,766	-		Psyr_1433	0.16	+0.3
1,621,766	-		Psyr_1433	0.16	-1.7
1,621,807	+		Psyr_1433	0.19	-1.2
1,621,807	+		Psyr_1433	0.19	-2.0
1,621,807	+		Psyr_1433	0.19	-0.9
1,621,807	+		Psyr_1433	0.19	+2.4
1,621,807	+		Psyr_1433	0.19	-0.3
1,621,807	+		Psyr_1433	0.19	-1.1
1,621,808	-		Psyr_1433	0.19	+0.5
1,621,808	-		Psyr_1433	0.19	-1.1
1,621,838	+		Psyr_1433	0.21	-1.0
1,621,839	-		Psyr_1433	0.21	-0.8
1,621,839	-		Psyr_1433	0.21	+0.3
1,621,839	-		Psyr_1433	0.21	-0.4
1,621,839	-		Psyr_1433	0.21	-0.8
1,621,865	-		Psyr_1433	0.23	-1.5
1,621,885	+		Psyr_1433	0.25	-0.5
1,621,886	-		Psyr_1433	0.25	-0.4
1,621,886	-		Psyr_1433	0.25	-0.3
1,621,896	+		Psyr_1433	0.25	+0.3
1,621,897	-		Psyr_1433	0.26	+0.3
1,621,902	+		Psyr_1433	0.26	-0.4
1,621,903	-		Psyr_1433	0.26	-1.1
1,621,903	-		Psyr_1433	0.26	+1.1
1,621,903	-		Psyr_1433	0.26	-0.0
1,622,022	+		Psyr_1433	0.34	+1.0
1,622,022	+		Psyr_1433	0.34	-1.1
1,622,022	+		Psyr_1433	0.34	-0.8
1,622,022	+		Psyr_1433	0.34	-0.2
1,622,022	+		Psyr_1433	0.34	-0.6
1,622,022	+		Psyr_1433	0.34	-0.3
1,622,023	-		Psyr_1433	0.34	+1.1
1,622,023	-		Psyr_1433	0.34	-0.3
1,622,023	-		Psyr_1433	0.34	+0.1
1,622,162	+		Psyr_1433	0.44	-1.1
1,622,163	-		Psyr_1433	0.44	+2.3
1,622,219	+		Psyr_1433	0.48	+0.1
1,622,299	+		Psyr_1433	0.54	-0.7
1,622,299	+		Psyr_1433	0.54	-1.2
1,622,299	+		Psyr_1433	0.54	+0.1
1,622,300	-		Psyr_1433	0.54	+0.8
1,622,300	-		Psyr_1433	0.54	+1.1
1,622,433	+		Psyr_1433	0.63	-0.2
1,622,433	+		Psyr_1433	0.63	+0.7
1,622,434	-		Psyr_1433	0.63	-0.2
1,622,453	-		Psyr_1433	0.65	-0.1
1,622,470	+		Psyr_1433	0.66	-0.6
1,622,501	+		Psyr_1433	0.68	+0.8
1,622,543	+		Psyr_1433	0.71	-0.6
1,622,693	+		Psyr_1433	0.82	-0.1
1,622,847	-				-0.2
1,622,867	+				-0.9
1,622,867	+				-0.7
1,622,868	-				-0.2
1,622,890	+				+1.1
1,622,890	+				+0.5
1,622,890	+				+1.7
1,622,890	+				-0.2
1,622,890	+				-0.6
1,622,890	+				+0.3
1,622,891	-				+0.3
1,622,891	-				-0.0
1,622,891	-				+1.1
1,622,891	-				+0.6
1,622,944	+				+2.7
1,622,945	-				+1.3
1,622,945	-				+0.3
1,622,945	-				-0.3
1,622,945	-				+0.6
1,622,945	-				-0.7
1,622,945	-				-0.9
1,622,952	+				+1.4
1,622,952	+				-1.5
1,622,952	+				-0.5
1,622,953	-				-0.4
1,622,953	-				+0.9
1,622,953	-				-0.9
1,622,953	-				-0.4
1,622,953	-				-0.2
1,622,953	-				+1.0
1,623,001	+				+0.7
1,623,002	-				+0.9
1,623,090	+				-0.7
1,623,090	+				+0.3
1,623,108	+				-0.4
1,623,108	+				-1.2
1,623,108	+				+1.4
1,623,111	+				-0.4
1,623,111	+				-0.6
1,623,111	+				+0.5
1,623,111	+				-0.3
1,623,111	+				-2.9
1,623,111	+				-1.7
1,623,111	+				+0.6
1,623,111	+				-1.3
1,623,111	+				-0.6
1,623,111	+				-0.2
1,623,111	+				-0.3
1,623,112	-				+0.9
1,623,112	-				+0.8
1,623,112	-				+0.1
1,623,112	-				+0.4
1,623,115	+				-0.4
1,623,115	+				-1.2
1,623,116	-				+0.4
1,623,145	+				-0.7
1,623,145	+				-1.8
1,623,145	+				+0.0
1,623,146	-				-1.2
1,623,146	-				-0.4
1,623,146	-				-0.1
1,623,161	+				+0.2
1,623,162	-				-0.9
1,623,225	+				-0.7
1,623,225	+				-0.2
1,623,225	+				+1.1
1,623,226	-				+0.6
1,623,226	-				-0.9
1,623,229	+				-0.1
1,623,229	+				-0.4
1,623,229	+				+0.2
1,623,230	-				+0.2
1,623,230	-				+0.8
1,623,231	+				-1.4
1,623,231	+				-0.5
1,623,231	+				+0.0
1,623,231	+				-0.2
1,623,231	+				-0.4
1,623,231	+				+1.3
1,623,232	-				-1.7
1,623,232	-				+0.2
1,623,232	-				+0.5
1,623,232	-				+0.5
1,623,232	-				+0.5
1,623,232	-				-0.4
1,623,232	-				+1.1
1,623,232	-				-0.4
1,623,232	-				-0.5
1,623,232	-				+0.1
1,623,232	-				-0.8
1,623,232	-				+0.2
1,623,269	+				-0.0
1,623,269	+				+0.6
1,623,270	-				-0.9
1,623,270	-				+1.1
1,623,270	-				+0.6
1,623,278	+				+0.7
1,623,279	-				+0.2
1,623,298	+				-0.4
1,623,298	+				+0.8
1,623,298	+				-0.6
1,623,298	+				-0.2
1,623,299	-				+1.6
1,623,314	+				-0.2
1,623,315	-				-1.2
1,623,324	-				-0.2
1,623,331	+				+0.6
1,623,361	+				+0.8
1,623,377	+				-2.1
1,623,377	+				-0.4
1,623,377	+				-0.9
1,623,377	+				-0.6
1,623,377	+				-0.4
1,623,377	+				-0.1
1,623,378	-				+1.1
1,623,378	-				+0.1
1,623,378	-				-1.7
1,623,378	-				-1.5
1,623,378	-				+0.1
1,623,378	-				+1.1
1,623,387	+				-0.2
1,623,387	+				-0.0
1,623,388	-				+0.5
1,623,388	-				-0.1
1,623,388	-				+0.3
1,623,427	+				-0.9
1,623,439	+				+1.1
1,623,439	+				+0.3
1,623,439	+				+0.2
1,623,440	-				+0.3
1,623,440	-				+0.1
1,623,472	+				-0.5
1,623,472	+				+0.9
1,623,472	+				-0.3
1,623,473	-				+0.4
1,623,473	-				+0.3
1,623,483	+				-1.0
1,623,483	+				+0.1
1,623,484	-				-0.7
1,623,484	-				-0.0
1,623,547	+				+0.1
1,623,547	+				+0.4
1,623,623	+		Psyr_1434	0.32	+0.1
1,623,623	+		Psyr_1434	0.32	-1.0
1,623,624	-		Psyr_1434	0.32	+0.8
1,623,719	+		Psyr_1434	0.63	+0.1
1,623,720	-		Psyr_1434	0.63	-0.1
1,623,733	-		Psyr_1434	0.67	-0.7
1,623,825	+				+1.1
1,623,825	+				-1.4
1,623,825	+				-0.1
1,623,826	-				+1.1
1,623,826	-				-0.2
1,623,826	-				-1.1
1,623,826	-				+0.2
1,623,827	+				+0.3
1,623,827	+				+0.9
1,623,827	+				+0.3
1,623,827	+				-0.2
1,623,827	+				-0.7
1,623,827	+				-0.8
1,623,827	+				-0.1
1,623,827	+				-0.4
1,623,827	+				+0.2
1,623,828	-				-0.2
1,623,828	-				+0.3
1,623,828	-				-0.1
1,623,828	-				+0.5
1,623,828	-				+0.5
1,623,828	-				-1.0
1,623,828	-				+0.8
1,623,847	+				+0.1
1,623,847	+				+0.5
1,623,848	-				-0.5
1,623,848	-				-1.1
1,623,848	-				-1.7
1,623,848	-				-0.1
1,623,848	-				+1.0
1,623,851	+				-0.9
1,623,851	+				-0.8
1,623,851	+				+0.3
1,623,852	-				+0.9
1,623,852	-				-0.1
1,623,852	-				+1.0
1,623,852	-				-0.5
1,623,852	-				-0.5
1,623,884	+				-1.5
1,623,885	-				+0.9
1,623,885	-				+0.4