Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0984

Experiment: MBOA 1.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 1.2 mM
1,113,861	+		Psyr_0982	0.75	-0.5
1,113,861	+		Psyr_0982	0.75	-0.3
1,113,861	+		Psyr_0982	0.75	-2.0
1,113,861	+		Psyr_0982	0.75	-2.0
1,113,861	+		Psyr_0982	0.75	-0.6
1,113,862	-		Psyr_0982	0.75	+0.2
1,113,862	-		Psyr_0982	0.75	-2.9
1,113,867	-		Psyr_0982	0.77	+0.8
1,113,913	+				-1.9
1,113,913	+				+1.4
1,113,913	+				+0.1
1,113,913	+				-2.9
1,113,914	-				-0.5
1,113,914	-				+0.6
1,113,969	-				-1.0
1,114,043	-		Psyr_0983	0.14	+0.2
1,114,253	+		Psyr_0983	0.47	+0.4
1,114,253	+		Psyr_0983	0.47	-1.9
1,114,253	+		Psyr_0983	0.47	-2.3
1,114,254	-		Psyr_0983	0.47	-0.5
1,114,360	+		Psyr_0983	0.64	-1.1
1,114,360	+		Psyr_0983	0.64	-1.9
1,114,360	+		Psyr_0983	0.64	-0.8
1,114,360	+		Psyr_0983	0.64	+0.5
1,114,360	+		Psyr_0983	0.64	+0.1
1,114,360	+		Psyr_0983	0.64	-2.1
1,114,360	+		Psyr_0983	0.64	+1.1
1,114,360	+		Psyr_0983	0.64	-0.9
1,114,361	-		Psyr_0983	0.64	-1.2
1,114,361	-		Psyr_0983	0.64	-0.5
1,114,361	-		Psyr_0983	0.64	-1.3
1,114,361	-		Psyr_0983	0.64	-1.5
1,114,361	-		Psyr_0983	0.64	-0.6
1,114,361	-		Psyr_0983	0.64	-1.9
1,114,361	-		Psyr_0983	0.64	+1.1
1,114,364	+		Psyr_0983	0.65	-1.9
1,114,364	+		Psyr_0983	0.65	+0.6
1,114,364	+		Psyr_0983	0.65	-0.8
1,114,364	+		Psyr_0983	0.65	+0.5
1,114,364	+		Psyr_0983	0.65	-0.5
1,114,364	+		Psyr_0983	0.65	-0.9
1,114,364	+		Psyr_0983	0.65	+0.2
1,114,365	-		Psyr_0983	0.65	+0.9
1,114,365	-		Psyr_0983	0.65	-0.9
1,114,365	-		Psyr_0983	0.65	+0.2
1,114,365	-		Psyr_0983	0.65	-1.3
1,114,365	-		Psyr_0983	0.65	-0.9
1,114,583	+				+0.5
1,114,638	+				-0.5
1,114,638	+				+0.7
1,114,638	+				-0.9
1,114,638	+				+0.5
1,114,638	+				-0.8
1,114,639	-				+0.5
1,114,639	-				-0.3
1,114,639	-				-0.9
1,114,639	-				+0.1
1,114,647	+				-2.9
1,114,752	+				+0.1
1,114,752	+				+0.6
1,114,752	+				-1.4
1,114,752	+				+1.1
1,114,752	+				-0.9
1,114,752	+				+1.1
1,114,753	-				-0.1
1,114,753	-				+1.1
1,114,753	-				-0.6
1,114,753	-				-0.9
1,114,757	+				-0.0
1,114,757	+				-0.3
1,114,758	-				-0.0
1,114,758	-				-0.0
1,114,764	+				-0.1
1,114,764	+				+0.2
1,114,764	+				+2.9
1,114,764	+				+0.1
1,114,764	+				+0.4
1,114,764	+				-0.9
1,114,765	-				+0.5
1,114,765	-				-0.6
1,114,765	-				-0.5
1,114,838	+		Psyr_0984	0.12	-0.7
1,114,838	+		Psyr_0984	0.12	+0.3
1,114,838	+		Psyr_0984	0.12	+0.4
1,114,878	+		Psyr_0984	0.16	-0.2
1,114,878	+		Psyr_0984	0.16	+0.1
1,114,878	+		Psyr_0984	0.16	-1.6
1,114,878	+		Psyr_0984	0.16	+0.6
1,114,878	+		Psyr_0984	0.16	-0.6
1,114,878	+		Psyr_0984	0.16	-0.5
1,114,878	+		Psyr_0984	0.16	-0.6
1,114,879	-		Psyr_0984	0.16	+0.2
1,114,879	-		Psyr_0984	0.16	+0.1
1,114,879	-		Psyr_0984	0.16	-0.8
1,114,879	-		Psyr_0984	0.16	-0.1
1,114,879	-		Psyr_0984	0.16	-1.1
1,114,879	-		Psyr_0984	0.16	+2.4
1,114,879	-		Psyr_0984	0.16	+0.1
1,114,879	-		Psyr_0984	0.16	-1.6
1,114,879	-		Psyr_0984	0.16	-0.3
1,114,879	-		Psyr_0984	0.16	-1.4
1,114,879	-		Psyr_0984	0.16	-2.4
1,114,879	-		Psyr_0984	0.16	-0.8
1,114,921	-		Psyr_0984	0.21	+0.2
1,114,933	-		Psyr_0984	0.23	+0.5
1,115,139	+		Psyr_0984	0.47	-0.5
1,115,139	+		Psyr_0984	0.47	+2.3
1,115,139	+		Psyr_0984	0.47	+0.3
1,115,140	-		Psyr_0984	0.47	-0.6
1,115,254	-		Psyr_0984	0.61	-0.3
1,115,254	-		Psyr_0984	0.61	-0.9
1,115,327	+		Psyr_0984	0.69	+1.2
1,115,327	+		Psyr_0984	0.69	+0.7
1,115,328	-		Psyr_0984	0.69	+0.3
1,115,340	+		Psyr_0984	0.71	+1.1
1,115,340	+		Psyr_0984	0.71	+1.1
1,115,341	-		Psyr_0984	0.71	+1.1
1,115,341	-		Psyr_0984	0.71	-0.9
1,115,421	+		Psyr_0984	0.80	-0.2
1,115,566	-				-0.7
1,115,580	-				+0.8
1,115,606	-				+0.4
1,115,632	-				+0.6
1,115,644	+				+0.3
1,115,645	-				+1.2
1,115,645	-				+0.5
1,115,645	-				-0.2
1,115,645	-				-0.5
1,115,645	-				-1.3
1,115,645	-				+0.8
1,115,674	+				-1.6
1,115,674	+				+0.0
1,115,674	+				-0.7
1,115,675	-				+0.6
1,115,830	+		Psyr_0985	0.32	+2.4
1,115,831	-		Psyr_0985	0.32	-0.0
1,115,831	-		Psyr_0985	0.32	+0.9
1,115,831	-		Psyr_0985	0.32	-0.3
1,115,831	-		Psyr_0985	0.32	+0.3
1,115,831	-		Psyr_0985	0.32	+1.2
1,115,831	-		Psyr_0985	0.32	+1.1
1,115,836	+		Psyr_0985	0.33	-0.3
1,115,836	+		Psyr_0985	0.33	-0.1
1,115,836	+		Psyr_0985	0.33	+0.4
1,115,837	-		Psyr_0985	0.33	+0.1
1,115,837	-		Psyr_0985	0.33	+1.3
1,116,040	+		Psyr_0985	0.68	+1.0
1,116,040	+		Psyr_0985	0.68	-0.6
1,116,210	+				+0.6
1,116,211	-				+1.1
1,116,211	-				-0.1
1,116,258	+				-0.5
1,116,267	+				-0.3
1,116,267	+				-0.2
1,116,268	-				-0.7
1,116,268	-				-0.6
1,116,268	-				-0.2
1,116,268	-				+0.0
1,116,268	-				+0.1
1,116,303	+				+1.7
1,116,303	+				+0.4
1,116,303	+				+0.1
1,116,304	-				-0.1
1,116,304	-				+1.2
1,116,304	-				-1.6
1,116,304	-				-0.2
1,116,352	+				-1.4
1,116,352	+				+0.7
1,116,352	+				+0.2
1,116,352	+				+0.5
1,116,352	+				+0.1
1,116,352	+				+0.6
1,116,352	+				-0.5
1,116,353	-				+0.4
1,116,353	-				+1.3
1,116,353	-				+0.2
1,116,353	-				-0.3
1,116,353	-				-0.6
1,116,373	+				+1.2
1,116,373	+				-0.5
1,116,373	+				-0.5
1,116,373	+				-0.7
1,116,373	+				-1.7
1,116,373	+				-0.3
1,116,373	+				-0.9
1,116,373	+				+0.6
1,116,373	+				-0.1
1,116,373	+				+0.5
1,116,373	+				-0.3
1,116,374	-				-0.5
1,116,374	-				+2.5
1,116,374	-				+0.2
1,116,374	-				-0.5
1,116,374	-				-1.1
1,116,374	-				-0.7
1,116,374	-				-0.8
1,116,374	-				-2.4
1,116,374	-				-3.0
1,116,374	-				-0.2
1,116,374	-				-2.0
1,116,374	-				-1.5
1,116,374	-				-0.1
1,116,382	-				-0.1
1,116,382	-				-0.1
1,116,382	-				+0.1
1,116,382	-				-0.8
1,116,382	-				-0.3
1,116,415	+				-0.3
1,116,415	+				+0.2
1,116,416	-				-0.4
1,116,470	+				-0.1
1,116,470	+				-0.2
1,116,470	+				+0.1
1,116,471	-				-1.1
1,116,493	+				+1.6
1,116,494	-				+1.6
1,116,494	-				-0.3
1,116,494	-				-0.4
1,116,576	-		Psyr_0986	0.10	+0.2