Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0276

Experiment: MBOA 1.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0275 and Psyr_0276 are separated by 67 nucleotidesPsyr_0276 and Psyr_0277 overlap by 1 nucleotidesPsyr_0277 and Psyr_0278 overlap by 8 nucleotides Psyr_0275: Psyr_0275 - Periplasmic solute binding protein, at 293,509 to 294,450 _0275 Psyr_0276: Psyr_0276 - zinc uptake regulation protein, putative, at 294,518 to 295,000 _0276 Psyr_0277: Psyr_0277 - ABC transporter, at 295,000 to 295,788 _0277 Psyr_0278: Psyr_0278 - ABC-3, at 295,781 to 296,569 _0278 Position (kb) 294 295 296Strain fitness (log2 ratio) -3 -2 -1 0 1at 293.518 kb on - strandat 293.518 kb on - strandat 293.591 kb on + strandat 293.683 kb on + strand, within Psyr_0275at 293.807 kb on + strand, within Psyr_0275at 293.827 kb on + strand, within Psyr_0275at 293.828 kb on - strand, within Psyr_0275at 293.834 kb on + strand, within Psyr_0275at 293.834 kb on + strand, within Psyr_0275at 293.834 kb on + strand, within Psyr_0275at 293.834 kb on + strand, within Psyr_0275at 293.835 kb on - strand, within Psyr_0275at 293.835 kb on - strand, within Psyr_0275at 293.835 kb on - strand, within Psyr_0275at 293.835 kb on - strand, within Psyr_0275at 293.835 kb on - strand, within Psyr_0275at 293.835 kb on - strand, within Psyr_0275at 294.238 kb on + strand, within Psyr_0275at 294.239 kb on - strand, within Psyr_0275at 294.239 kb on - strand, within Psyr_0275at 294.248 kb on - strand, within Psyr_0275at 294.270 kb on - strand, within Psyr_0275at 294.270 kb on - strand, within Psyr_0275at 294.270 kb on - strand, within Psyr_0275at 294.273 kb on + strand, within Psyr_0275at 294.312 kb on + strand, within Psyr_0275at 294.328 kb on + strand, within Psyr_0275at 294.329 kb on - strand, within Psyr_0275at 294.436 kb on + strandat 294.437 kb on - strandat 294.463 kb on + strandat 294.464 kb on - strandat 294.485 kb on + strandat 294.485 kb on + strandat 294.485 kb on + strandat 294.485 kb on + strandat 294.485 kb on + strandat 294.485 kb on + strandat 294.485 kb on + strandat 294.485 kb on + strandat 294.486 kb on - strandat 294.486 kb on - strandat 294.486 kb on - strandat 294.486 kb on - strandat 294.486 kb on - strandat 294.486 kb on - strandat 294.504 kb on + strandat 294.526 kb on + strandat 294.598 kb on - strand, within Psyr_0276at 294.598 kb on - strand, within Psyr_0276at 294.598 kb on - strand, within Psyr_0276at 294.683 kb on + strand, within Psyr_0276at 294.683 kb on + strand, within Psyr_0276at 294.976 kb on - strandat 295.016 kb on + strandat 295.016 kb on + strandat 295.016 kb on + strandat 295.016 kb on + strandat 295.017 kb on - strandat 295.017 kb on - strandat 295.017 kb on - strandat 295.213 kb on + strand, within Psyr_0277at 295.213 kb on + strand, within Psyr_0277at 295.213 kb on + strand, within Psyr_0277at 295.213 kb on + strand, within Psyr_0277at 295.213 kb on + strand, within Psyr_0277at 295.214 kb on - strand, within Psyr_0277at 295.460 kb on + strand, within Psyr_0277at 295.461 kb on - strand, within Psyr_0277at 295.480 kb on + strand, within Psyr_0277at 295.481 kb on - strand, within Psyr_0277at 295.681 kb on + strand, within Psyr_0277at 295.681 kb on + strand, within Psyr_0277at 295.681 kb on + strand, within Psyr_0277at 295.681 kb on + strand, within Psyr_0277at 295.681 kb on + strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.776 kb on + strandat 295.776 kb on + strandat 295.776 kb on + strandat 295.777 kb on - strandat 295.777 kb on - strandat 295.794 kb on + strandat 295.795 kb on - strandat 295.795 kb on - strandat 295.799 kb on + strandat 295.799 kb on + strandat 295.799 kb on + strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.877 kb on + strand, within Psyr_0278at 295.877 kb on + strand, within Psyr_0278at 295.878 kb on - strand, within Psyr_0278at 295.878 kb on - strand, within Psyr_0278at 295.878 kb on - strand, within Psyr_0278at 295.878 kb on - strand, within Psyr_0278

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Per-strain Table

Position Strand Gene LocusTag Fraction MBOA 1.2 mM
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293,518 - +0.4
293,518 - -0.5
293,591 + -0.1
293,683 + Psyr_0275 0.18 +0.7
293,807 + Psyr_0275 0.32 -0.2
293,827 + Psyr_0275 0.34 -2.8
293,828 - Psyr_0275 0.34 +0.1
293,834 + Psyr_0275 0.35 -1.0
293,834 + Psyr_0275 0.35 -1.2
293,834 + Psyr_0275 0.35 -1.4
293,834 + Psyr_0275 0.35 -0.9
293,835 - Psyr_0275 0.35 -2.1
293,835 - Psyr_0275 0.35 -0.8
293,835 - Psyr_0275 0.35 +0.2
293,835 - Psyr_0275 0.35 -0.8
293,835 - Psyr_0275 0.35 -0.5
293,835 - Psyr_0275 0.35 -3.3
294,238 + Psyr_0275 0.77 +0.1
294,239 - Psyr_0275 0.77 -2.6
294,239 - Psyr_0275 0.77 -0.6
294,248 - Psyr_0275 0.78 -0.8
294,270 - Psyr_0275 0.81 +1.1
294,270 - Psyr_0275 0.81 -1.2
294,270 - Psyr_0275 0.81 -0.1
294,273 + Psyr_0275 0.81 -0.3
294,312 + Psyr_0275 0.85 -0.6
294,328 + Psyr_0275 0.87 -3.4
294,329 - Psyr_0275 0.87 -1.5
294,436 + -1.7
294,437 - -0.3
294,463 + +0.4
294,464 - +1.5
294,485 + -0.0
294,485 + +0.1
294,485 + -0.0
294,485 + -0.1
294,485 + -0.0
294,485 + +0.2
294,485 + -2.7
294,485 + +1.3
294,486 - +1.1
294,486 - -0.3
294,486 - -0.1
294,486 - +0.8
294,486 - -0.9
294,486 - -2.2
294,504 + +0.4
294,526 + -0.9
294,598 - Psyr_0276 0.17 +0.3
294,598 - Psyr_0276 0.17 +0.5
294,598 - Psyr_0276 0.17 -0.7
294,683 + Psyr_0276 0.34 -0.2
294,683 + Psyr_0276 0.34 -0.3
294,976 - -0.7
295,016 + +1.1
295,016 + +0.4
295,016 + +0.7
295,016 + -0.1
295,017 - -0.3
295,017 - +0.0
295,017 - -0.1
295,213 + Psyr_0277 0.27 -0.1
295,213 + Psyr_0277 0.27 -0.5
295,213 + Psyr_0277 0.27 +0.7
295,213 + Psyr_0277 0.27 -0.9
295,213 + Psyr_0277 0.27 -0.7
295,214 - Psyr_0277 0.27 -0.5
295,460 + Psyr_0277 0.58 -0.4
295,461 - Psyr_0277 0.58 -0.3
295,480 + Psyr_0277 0.61 -0.4
295,481 - Psyr_0277 0.61 -0.7
295,681 + Psyr_0277 0.86 +0.4
295,681 + Psyr_0277 0.86 -0.3
295,681 + Psyr_0277 0.86 +0.0
295,681 + Psyr_0277 0.86 +0.2
295,681 + Psyr_0277 0.86 +1.5
295,682 - Psyr_0277 0.86 +0.0
295,682 - Psyr_0277 0.86 -0.2
295,682 - Psyr_0277 0.86 +0.1
295,682 - Psyr_0277 0.86 -1.8
295,682 - Psyr_0277 0.86 -0.3
295,682 - Psyr_0277 0.86 +0.1
295,776 + -0.0
295,776 + +0.8
295,776 + -0.0
295,777 - -2.0
295,777 - -1.0
295,794 + -0.7
295,795 - +0.2
295,795 - -0.9
295,799 + +1.6
295,799 + +0.1
295,799 + +0.2
295,800 - -0.5
295,800 - +0.2
295,800 - +0.3
295,800 - -1.1
295,800 - -0.5
295,800 - -0.1
295,800 - +0.4
295,800 - -0.3
295,800 - -0.9
295,800 - +0.3
295,877 + Psyr_0278 0.12 -1.7
295,877 + Psyr_0278 0.12 -0.2
295,878 - Psyr_0278 0.12 -2.6
295,878 - Psyr_0278 0.12 -2.1
295,878 - Psyr_0278 0.12 -1.4
295,878 - Psyr_0278 0.12 -0.6

Or see this region's nucleotide sequence