Experiment: MBOA 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3931 and Psyr_3932 overlap by 4 nucleotides Psyr_3932 and Psyr_3933 overlap by 4 nucleotides Psyr_3933 and Psyr_3934 are separated by 22 nucleotides
Psyr_3931: Psyr_3931 - conserved hypothetical protein, at 4,676,822 to 4,678,018
_3931
Psyr_3932: Psyr_3932 - Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K, at 4,678,015 to 4,679,022
_3932
Psyr_3933: Psyr_3933 - conserved hypothetical protein, at 4,679,019 to 4,679,318
_3933
Psyr_3934: Psyr_3934 - Short-chain dehydrogenase/reductase SDR, at 4,679,341 to 4,680,090
_3934
Position (kb)
4678
4679
4680 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4677.030 kb on + strand, within Psyr_3931 at 4677.036 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.093 kb on + strand, within Psyr_3931 at 4677.147 kb on + strand, within Psyr_3931 at 4677.153 kb on + strand, within Psyr_3931 at 4677.154 kb on - strand, within Psyr_3931 at 4677.154 kb on - strand, within Psyr_3931 at 4677.534 kb on - strand, within Psyr_3931 at 4677.858 kb on + strand, within Psyr_3931 at 4677.859 kb on - strand, within Psyr_3931 at 4677.867 kb on + strand, within Psyr_3931 at 4677.868 kb on - strand, within Psyr_3931 at 4678.264 kb on + strand, within Psyr_3932 at 4678.265 kb on - strand, within Psyr_3932 at 4678.265 kb on - strand, within Psyr_3932 at 4678.464 kb on + strand, within Psyr_3932 at 4679.158 kb on + strand, within Psyr_3933 at 4679.158 kb on + strand, within Psyr_3933 at 4679.159 kb on - strand, within Psyr_3933 at 4679.226 kb on - strand, within Psyr_3933 at 4679.226 kb on - strand, within Psyr_3933 at 4679.776 kb on - strand, within Psyr_3934 at 4680.015 kb on - strand, within Psyr_3934
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 0.5 mM remove 4,677,030 + Psyr_3931 0.17 +0.0 4,677,036 + Psyr_3931 0.18 +0.5 4,677,090 + Psyr_3931 0.22 -0.5 4,677,090 + Psyr_3931 0.22 -0.7 4,677,090 + Psyr_3931 0.22 +0.0 4,677,090 + Psyr_3931 0.22 +0.2 4,677,090 + Psyr_3931 0.22 -0.6 4,677,090 + Psyr_3931 0.22 +1.8 4,677,090 + Psyr_3931 0.22 -0.1 4,677,091 - Psyr_3931 0.22 -0.2 4,677,091 - Psyr_3931 0.22 -0.4 4,677,091 - Psyr_3931 0.22 +0.3 4,677,091 - Psyr_3931 0.22 -0.8 4,677,091 - Psyr_3931 0.22 -0.8 4,677,091 - Psyr_3931 0.22 +0.3 4,677,091 - Psyr_3931 0.22 +0.3 4,677,091 - Psyr_3931 0.22 -0.1 4,677,091 - Psyr_3931 0.22 -0.3 4,677,093 + Psyr_3931 0.23 +0.9 4,677,147 + Psyr_3931 0.27 -1.4 4,677,153 + Psyr_3931 0.28 +1.0 4,677,154 - Psyr_3931 0.28 +1.5 4,677,154 - Psyr_3931 0.28 +0.1 4,677,534 - Psyr_3931 0.59 -1.8 4,677,858 + Psyr_3931 0.87 -0.4 4,677,859 - Psyr_3931 0.87 -1.4 4,677,867 + Psyr_3931 0.87 -0.3 4,677,868 - Psyr_3931 0.87 -1.0 4,678,264 + Psyr_3932 0.25 -2.4 4,678,265 - Psyr_3932 0.25 -0.5 4,678,265 - Psyr_3932 0.25 -0.2 4,678,464 + Psyr_3932 0.45 -1.5 4,679,158 + Psyr_3933 0.46 -0.0 4,679,158 + Psyr_3933 0.46 -1.5 4,679,159 - Psyr_3933 0.47 -0.5 4,679,226 - Psyr_3933 0.69 +0.0 4,679,226 - Psyr_3933 0.69 -1.5 4,679,776 - Psyr_3934 0.58 -0.5 4,680,015 - Psyr_3934 0.90 -0.7
Or see this region's nucleotide sequence