Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1077

Experiment: MBOA 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1076 and Psyr_1077 are separated by 42 nucleotidesPsyr_1077 and Psyr_1078 are separated by 48 nucleotidesPsyr_1078 and Psyr_1079 are separated by 88 nucleotides Psyr_1076: Psyr_1076 - Cyanate transport system protein, at 1,219,265 to 1,220,509 _1076 Psyr_1077: Psyr_1077 - Isoflavone reductase, at 1,220,552 to 1,221,490 _1077 Psyr_1078: Psyr_1078 - Protein of unknown function DUF24, at 1,221,539 to 1,221,982 _1078 Psyr_1079: Psyr_1079 - conserved hypothetical protein, at 1,222,071 to 1,222,562 _1079 Position (kb) 1220 1221 1222Strain fitness (log2 ratio) -2 -1 0 1at 1219.733 kb on + strand, within Psyr_1076at 1219.733 kb on + strand, within Psyr_1076at 1219.733 kb on + strand, within Psyr_1076at 1219.734 kb on - strand, within Psyr_1076at 1219.796 kb on + strand, within Psyr_1076at 1219.796 kb on + strand, within Psyr_1076at 1219.796 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.988 kb on + strand, within Psyr_1076at 1219.989 kb on - strand, within Psyr_1076at 1219.989 kb on - strand, within Psyr_1076at 1219.989 kb on - strand, within Psyr_1076at 1219.989 kb on - strand, within Psyr_1076at 1220.108 kb on + strand, within Psyr_1076at 1220.109 kb on - strand, within Psyr_1076at 1220.192 kb on + strand, within Psyr_1076at 1220.343 kb on - strand, within Psyr_1076at 1220.622 kb on + strandat 1220.623 kb on - strandat 1220.623 kb on - strandat 1220.623 kb on - strandat 1220.623 kb on - strandat 1220.623 kb on - strandat 1220.623 kb on - strandat 1220.623 kb on - strandat 1220.623 kb on - strandat 1220.623 kb on - strandat 1220.738 kb on + strand, within Psyr_1077at 1220.739 kb on - strand, within Psyr_1077at 1220.796 kb on + strand, within Psyr_1077at 1220.796 kb on + strand, within Psyr_1077at 1220.796 kb on + strand, within Psyr_1077at 1220.797 kb on - strand, within Psyr_1077at 1220.820 kb on + strand, within Psyr_1077at 1220.820 kb on + strand, within Psyr_1077at 1220.820 kb on + strand, within Psyr_1077at 1220.821 kb on - strand, within Psyr_1077at 1220.821 kb on - strand, within Psyr_1077at 1220.821 kb on - strand, within Psyr_1077at 1220.821 kb on - strand, within Psyr_1077at 1220.989 kb on + strand, within Psyr_1077at 1220.989 kb on + strand, within Psyr_1077at 1220.990 kb on - strand, within Psyr_1077at 1220.990 kb on - strand, within Psyr_1077at 1220.990 kb on - strand, within Psyr_1077at 1220.990 kb on - strand, within Psyr_1077at 1221.106 kb on - strand, within Psyr_1077at 1221.140 kb on + strand, within Psyr_1077at 1221.141 kb on - strand, within Psyr_1077at 1221.141 kb on - strand, within Psyr_1077at 1221.141 kb on - strand, within Psyr_1077at 1221.226 kb on - strand, within Psyr_1077at 1221.343 kb on + strand, within Psyr_1077at 1221.343 kb on + strand, within Psyr_1077at 1221.362 kb on + strand, within Psyr_1077at 1221.446 kb on + strandat 1221.446 kb on + strandat 1221.446 kb on + strandat 1221.446 kb on + strandat 1221.446 kb on + strandat 1221.446 kb on + strandat 1221.446 kb on + strandat 1221.446 kb on + strandat 1221.446 kb on + strandat 1221.447 kb on - strandat 1221.447 kb on - strandat 1221.447 kb on - strandat 1221.447 kb on - strandat 1221.447 kb on - strandat 1221.447 kb on - strandat 1221.447 kb on - strandat 1221.447 kb on - strandat 1221.447 kb on - strandat 1221.552 kb on + strandat 1221.553 kb on - strandat 1221.553 kb on - strandat 1221.561 kb on + strandat 1221.561 kb on + strandat 1221.793 kb on + strand, within Psyr_1078at 1221.793 kb on + strand, within Psyr_1078at 1221.793 kb on + strand, within Psyr_1078at 1221.793 kb on + strand, within Psyr_1078at 1221.793 kb on + strand, within Psyr_1078at 1221.794 kb on - strand, within Psyr_1078at 1221.794 kb on - strand, within Psyr_1078at 1221.794 kb on - strand, within Psyr_1078at 1221.794 kb on - strand, within Psyr_1078at 1221.867 kb on - strand, within Psyr_1078at 1221.900 kb on + strand, within Psyr_1078at 1221.900 kb on + strand, within Psyr_1078at 1221.901 kb on - strand, within Psyr_1078at 1221.901 kb on - strand, within Psyr_1078at 1221.980 kb on + strandat 1221.980 kb on + strandat 1221.981 kb on - strandat 1222.047 kb on + strandat 1222.077 kb on + strandat 1222.077 kb on + strandat 1222.078 kb on - strandat 1222.122 kb on + strand, within Psyr_1079at 1222.123 kb on - strand, within Psyr_1079at 1222.123 kb on - strand, within Psyr_1079at 1222.167 kb on + strandat 1222.167 kb on + strand, within Psyr_1079at 1222.167 kb on + strand, within Psyr_1079at 1222.168 kb on - strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.332 kb on + strand, within Psyr_1079at 1222.333 kb on - strand, within Psyr_1079

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Per-strain Table

Position Strand Gene LocusTag Fraction MBOA 0.5 mM
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1,219,733 + Psyr_1076 0.38 +1.1
1,219,733 + Psyr_1076 0.38 -0.3
1,219,733 + Psyr_1076 0.38 -0.2
1,219,734 - Psyr_1076 0.38 +0.0
1,219,796 + Psyr_1076 0.43 +1.3
1,219,796 + Psyr_1076 0.43 +0.3
1,219,796 + Psyr_1076 0.43 -0.4
1,219,961 + Psyr_1076 0.56 -1.4
1,219,961 + Psyr_1076 0.56 -0.7
1,219,961 + Psyr_1076 0.56 +0.3
1,219,961 + Psyr_1076 0.56 +0.3
1,219,961 + Psyr_1076 0.56 +1.2
1,219,961 + Psyr_1076 0.56 -0.1
1,219,961 + Psyr_1076 0.56 -0.1
1,219,961 + Psyr_1076 0.56 +0.6
1,219,961 + Psyr_1076 0.56 -0.9
1,219,962 - Psyr_1076 0.56 +0.5
1,219,962 - Psyr_1076 0.56 -1.0
1,219,962 - Psyr_1076 0.56 +0.5
1,219,962 - Psyr_1076 0.56 -1.1
1,219,962 - Psyr_1076 0.56 -0.3
1,219,962 - Psyr_1076 0.56 -0.0
1,219,962 - Psyr_1076 0.56 -0.1
1,219,988 + Psyr_1076 0.58 -2.0
1,219,989 - Psyr_1076 0.58 +0.2
1,219,989 - Psyr_1076 0.58 -0.1
1,219,989 - Psyr_1076 0.58 +0.2
1,219,989 - Psyr_1076 0.58 -0.3
1,220,108 + Psyr_1076 0.68 +0.2
1,220,109 - Psyr_1076 0.68 +0.2
1,220,192 + Psyr_1076 0.74 +0.2
1,220,343 - Psyr_1076 0.87 +0.1
1,220,622 + +0.6
1,220,623 - +0.1
1,220,623 - +0.4
1,220,623 - -0.1
1,220,623 - -0.9
1,220,623 - -0.8
1,220,623 - -0.3
1,220,623 - +0.0
1,220,623 - +1.2
1,220,623 - -1.1
1,220,738 + Psyr_1077 0.20 -0.7
1,220,739 - Psyr_1077 0.20 +0.7
1,220,796 + Psyr_1077 0.26 -0.4
1,220,796 + Psyr_1077 0.26 -1.0
1,220,796 + Psyr_1077 0.26 +1.0
1,220,797 - Psyr_1077 0.26 -1.3
1,220,820 + Psyr_1077 0.29 +0.4
1,220,820 + Psyr_1077 0.29 +0.6
1,220,820 + Psyr_1077 0.29 -1.5
1,220,821 - Psyr_1077 0.29 +0.4
1,220,821 - Psyr_1077 0.29 +1.0
1,220,821 - Psyr_1077 0.29 -0.8
1,220,821 - Psyr_1077 0.29 +0.9
1,220,989 + Psyr_1077 0.47 +0.0
1,220,989 + Psyr_1077 0.47 -1.1
1,220,990 - Psyr_1077 0.47 +0.3
1,220,990 - Psyr_1077 0.47 +0.3
1,220,990 - Psyr_1077 0.47 +0.5
1,220,990 - Psyr_1077 0.47 +1.0
1,221,106 - Psyr_1077 0.59 +0.1
1,221,140 + Psyr_1077 0.63 -2.4
1,221,141 - Psyr_1077 0.63 +0.8
1,221,141 - Psyr_1077 0.63 -0.2
1,221,141 - Psyr_1077 0.63 -0.2
1,221,226 - Psyr_1077 0.72 -0.0
1,221,343 + Psyr_1077 0.84 +0.4
1,221,343 + Psyr_1077 0.84 -0.1
1,221,362 + Psyr_1077 0.86 -0.3
1,221,446 + -0.4
1,221,446 + -0.4
1,221,446 + +1.3
1,221,446 + +0.1
1,221,446 + +0.0
1,221,446 + -2.0
1,221,446 + +0.7
1,221,446 + +0.6
1,221,446 + -0.4
1,221,447 - -0.4
1,221,447 - -0.2
1,221,447 - +0.2
1,221,447 - -0.1
1,221,447 - +0.7
1,221,447 - -1.6
1,221,447 - +0.4
1,221,447 - +0.0
1,221,447 - -1.6
1,221,552 + -0.6
1,221,553 - -0.2
1,221,553 - -0.6
1,221,561 + -0.3
1,221,561 + -0.2
1,221,793 + Psyr_1078 0.57 -1.4
1,221,793 + Psyr_1078 0.57 -0.3
1,221,793 + Psyr_1078 0.57 +0.0
1,221,793 + Psyr_1078 0.57 -0.4
1,221,793 + Psyr_1078 0.57 -0.3
1,221,794 - Psyr_1078 0.57 +0.6
1,221,794 - Psyr_1078 0.57 +1.2
1,221,794 - Psyr_1078 0.57 +0.4
1,221,794 - Psyr_1078 0.57 +0.2
1,221,867 - Psyr_1078 0.74 -0.3
1,221,900 + Psyr_1078 0.81 +0.3
1,221,900 + Psyr_1078 0.81 +0.3
1,221,901 - Psyr_1078 0.82 +0.4
1,221,901 - Psyr_1078 0.82 +0.3
1,221,980 + -0.2
1,221,980 + +1.6
1,221,981 - +1.0
1,222,047 + +0.7
1,222,077 + -0.2
1,222,077 + +0.2
1,222,078 - +1.0
1,222,122 + Psyr_1079 0.10 -0.5
1,222,123 - Psyr_1079 0.11 +0.8
1,222,123 - Psyr_1079 0.11 -1.5
1,222,167 + +0.2
1,222,167 + Psyr_1079 0.20 -1.6
1,222,167 + Psyr_1079 0.20 -0.0
1,222,168 - Psyr_1079 0.20 -0.3
1,222,332 + Psyr_1079 0.53 -0.4
1,222,332 + Psyr_1079 0.53 -0.8
1,222,332 + Psyr_1079 0.53 -0.2
1,222,332 + Psyr_1079 0.53 -1.1
1,222,332 + Psyr_1079 0.53 -0.6
1,222,332 + Psyr_1079 0.53 -0.5
1,222,333 - Psyr_1079 0.53 -0.3

Or see this region's nucleotide sequence