Experiment: MBOA 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0815 and Psyr_0816 are separated by 354 nucleotides Psyr_0816 and Psyr_0817 are separated by 203 nucleotides Psyr_0817 and Psyr_0818 are separated by 15 nucleotides
Psyr_0815: Psyr_0815 - nicotinate-nucleotide pyrophosphorylase (carboxylating), at 919,536 to 920,384
_0815
Psyr_0816: Psyr_0816 - conserved hypothetical protein, at 920,739 to 922,994
_0816
Psyr_0817: Psyr_0817 - N-acetylmuramoyl-L-alanine amidase, family 2, at 923,198 to 923,746
_0817
Psyr_0818: Psyr_0818 - ampE protein, at 923,762 to 924,598
_0818
Position (kb) 920
921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 919.894 kb on + strand, within Psyr_0815 at 919.939 kb on + strand, within Psyr_0815 at 919.939 kb on + strand, within Psyr_0815 at 919.939 kb on + strand, within Psyr_0815 at 919.940 kb on - strand, within Psyr_0815 at 919.940 kb on - strand, within Psyr_0815 at 919.940 kb on - strand, within Psyr_0815 at 919.940 kb on - strand, within Psyr_0815 at 920.023 kb on + strand, within Psyr_0815 at 920.023 kb on + strand, within Psyr_0815 at 920.023 kb on + strand, within Psyr_0815 at 920.023 kb on + strand, within Psyr_0815 at 920.023 kb on + strand, within Psyr_0815 at 920.024 kb on - strand, within Psyr_0815 at 920.024 kb on - strand, within Psyr_0815 at 920.238 kb on - strand, within Psyr_0815 at 920.374 kb on - strand at 920.414 kb on + strand at 920.414 kb on + strand at 920.415 kb on - strand at 920.415 kb on - strand at 920.415 kb on - strand at 920.416 kb on + strand at 920.417 kb on - strand at 920.417 kb on - strand at 920.417 kb on - strand at 920.462 kb on + strand at 920.463 kb on - strand at 920.614 kb on + strand at 920.626 kb on + strand at 920.626 kb on + strand at 920.626 kb on + strand at 920.626 kb on + strand at 920.627 kb on - strand at 920.627 kb on - strand at 920.688 kb on - strand at 920.688 kb on - strand at 920.737 kb on + strand at 920.737 kb on + strand at 920.737 kb on + strand at 920.737 kb on + strand at 920.738 kb on - strand at 920.738 kb on - strand at 920.738 kb on - strand at 920.759 kb on - strand at 920.785 kb on + strand at 920.816 kb on - strand at 920.995 kb on + strand, within Psyr_0816 at 920.995 kb on + strand, within Psyr_0816 at 920.995 kb on + strand, within Psyr_0816 at 920.995 kb on + strand, within Psyr_0816 at 920.996 kb on - strand, within Psyr_0816 at 920.996 kb on - strand, within Psyr_0816 at 920.996 kb on - strand, within Psyr_0816 at 920.996 kb on - strand, within Psyr_0816 at 921.021 kb on + strand, within Psyr_0816 at 921.022 kb on - strand, within Psyr_0816 at 921.022 kb on - strand, within Psyr_0816 at 921.022 kb on - strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.376 kb on - strand, within Psyr_0816 at 921.376 kb on - strand, within Psyr_0816 at 921.376 kb on - strand, within Psyr_0816 at 921.412 kb on + strand, within Psyr_0816 at 921.413 kb on - strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 922.002 kb on + strand, within Psyr_0816 at 922.003 kb on - strand, within Psyr_0816 at 922.003 kb on - strand, within Psyr_0816 at 922.210 kb on + strand, within Psyr_0816 at 922.210 kb on + strand, within Psyr_0816 at 922.210 kb on + strand, within Psyr_0816 at 922.211 kb on - strand, within Psyr_0816 at 922.702 kb on + strand, within Psyr_0816 at 922.703 kb on - strand, within Psyr_0816 at 922.703 kb on - strand, within Psyr_0816 at 922.796 kb on + strand at 922.796 kb on + strand at 922.796 kb on + strand at 922.797 kb on - strand at 922.797 kb on - strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.831 kb on - strand at 922.913 kb on - strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.917 kb on - strand at 922.917 kb on - strand at 922.917 kb on - strand at 922.917 kb on - strand at 923.031 kb on + strand at 923.031 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.109 kb on - strand at 923.159 kb on - strand at 923.168 kb on + strand at 923.169 kb on - strand at 923.172 kb on + strand at 923.172 kb on + strand at 923.173 kb on - strand at 923.173 kb on - strand at 923.388 kb on - strand, within Psyr_0817 at 923.588 kb on + strand, within Psyr_0817 at 923.589 kb on - strand, within Psyr_0817 at 923.653 kb on + strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.779 kb on - strand at 923.976 kb on - strand, within Psyr_0818
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 0.5 mM remove 919,894 + Psyr_0815 0.42 +0.8 919,939 + Psyr_0815 0.47 +0.6 919,939 + Psyr_0815 0.47 +0.5 919,939 + Psyr_0815 0.47 +0.0 919,940 - Psyr_0815 0.48 -1.0 919,940 - Psyr_0815 0.48 +0.2 919,940 - Psyr_0815 0.48 -2.1 919,940 - Psyr_0815 0.48 -0.1 920,023 + Psyr_0815 0.57 +1.3 920,023 + Psyr_0815 0.57 +0.7 920,023 + Psyr_0815 0.57 -0.9 920,023 + Psyr_0815 0.57 +0.6 920,023 + Psyr_0815 0.57 +1.6 920,024 - Psyr_0815 0.57 +1.3 920,024 - Psyr_0815 0.57 +0.5 920,238 - Psyr_0815 0.83 -2.4 920,374 - -0.3 920,414 + +0.0 920,414 + -0.5 920,415 - -0.0 920,415 - +1.5 920,415 - -0.6 920,416 + -0.9 920,417 - -2.7 920,417 - +1.6 920,417 - +0.0 920,462 + -0.0 920,463 - +0.2 920,614 + -0.7 920,626 + -1.8 920,626 + +0.2 920,626 + -0.6 920,626 + -0.6 920,627 - -0.4 920,627 - +1.0 920,688 - -0.7 920,688 - -0.5 920,737 + +0.5 920,737 + -0.4 920,737 + -0.4 920,737 + +0.1 920,738 - +0.1 920,738 - -0.2 920,738 - -0.5 920,759 - +1.0 920,785 + -1.1 920,816 - +1.3 920,995 + Psyr_0816 0.11 -3.1 920,995 + Psyr_0816 0.11 -0.3 920,995 + Psyr_0816 0.11 -0.2 920,995 + Psyr_0816 0.11 +0.4 920,996 - Psyr_0816 0.11 -0.3 920,996 - Psyr_0816 0.11 +0.5 920,996 - Psyr_0816 0.11 +0.5 920,996 - Psyr_0816 0.11 +0.7 921,021 + Psyr_0816 0.12 -0.4 921,022 - Psyr_0816 0.13 +0.6 921,022 - Psyr_0816 0.13 -0.0 921,022 - Psyr_0816 0.13 +0.6 921,348 + Psyr_0816 0.27 -0.8 921,348 + Psyr_0816 0.27 +1.0 921,348 + Psyr_0816 0.27 +0.8 921,348 + Psyr_0816 0.27 +2.0 921,348 + Psyr_0816 0.27 +1.2 921,348 + Psyr_0816 0.27 -0.3 921,349 - Psyr_0816 0.27 +0.1 921,349 - Psyr_0816 0.27 -0.3 921,349 - Psyr_0816 0.27 -0.1 921,349 - Psyr_0816 0.27 +0.5 921,349 - Psyr_0816 0.27 +0.3 921,349 - Psyr_0816 0.27 +0.5 921,376 - Psyr_0816 0.28 +0.8 921,376 - Psyr_0816 0.28 +0.5 921,376 - Psyr_0816 0.28 +0.1 921,412 + Psyr_0816 0.30 -0.2 921,413 - Psyr_0816 0.30 -0.4 921,672 + Psyr_0816 0.41 -0.0 921,672 + Psyr_0816 0.41 +0.2 921,672 + Psyr_0816 0.41 -0.8 921,672 + Psyr_0816 0.41 -0.7 921,672 + Psyr_0816 0.41 -0.6 921,672 + Psyr_0816 0.41 -0.4 921,672 + Psyr_0816 0.41 +0.7 921,672 + Psyr_0816 0.41 -1.0 921,672 + Psyr_0816 0.41 -0.0 921,672 + Psyr_0816 0.41 +1.0 921,672 + Psyr_0816 0.41 +0.7 921,672 + Psyr_0816 0.41 +0.1 921,672 + Psyr_0816 0.41 -0.1 921,672 + Psyr_0816 0.41 -0.2 921,672 + Psyr_0816 0.41 -2.5 921,672 + Psyr_0816 0.41 +0.7 921,672 + Psyr_0816 0.41 -0.8 921,673 - Psyr_0816 0.41 +1.1 921,673 - Psyr_0816 0.41 +0.9 921,673 - Psyr_0816 0.41 +0.3 921,673 - Psyr_0816 0.41 +0.3 921,673 - Psyr_0816 0.41 -0.2 921,673 - Psyr_0816 0.41 -1.5 921,673 - Psyr_0816 0.41 +1.3 921,673 - Psyr_0816 0.41 -0.0 921,673 - Psyr_0816 0.41 +0.1 921,673 - Psyr_0816 0.41 -0.7 921,673 - Psyr_0816 0.41 -2.0 921,673 - Psyr_0816 0.41 -1.0 921,673 - Psyr_0816 0.41 -1.0 921,673 - Psyr_0816 0.41 -1.7 921,673 - Psyr_0816 0.41 -0.1 921,673 - Psyr_0816 0.41 +0.8 921,673 - Psyr_0816 0.41 +0.2 921,673 - Psyr_0816 0.41 -1.0 922,002 + Psyr_0816 0.56 +0.2 922,003 - Psyr_0816 0.56 +0.0 922,003 - Psyr_0816 0.56 +0.2 922,210 + Psyr_0816 0.65 -0.0 922,210 + Psyr_0816 0.65 +0.3 922,210 + Psyr_0816 0.65 -1.5 922,211 - Psyr_0816 0.65 -0.2 922,702 + Psyr_0816 0.87 +0.2 922,703 - Psyr_0816 0.87 -0.2 922,703 - Psyr_0816 0.87 +0.2 922,796 + +0.9 922,796 + +0.6 922,796 + -0.7 922,797 - +0.8 922,797 - +0.4 922,830 + +0.7 922,830 + +0.5 922,830 + -1.1 922,830 + +2.0 922,831 - +1.3 922,913 - +1.0 922,916 + +0.6 922,916 + +0.4 922,916 + -0.1 922,916 + +0.1 922,916 + +1.4 922,916 + +0.2 922,916 + +0.4 922,917 - -0.2 922,917 - +0.3 922,917 - +0.5 922,917 - -1.0 923,031 + +0.5 923,031 + +0.2 923,094 + +2.4 923,094 + +1.0 923,094 + +0.2 923,094 + -1.3 923,094 + -0.5 923,094 + -3.1 923,108 + -0.2 923,108 + -0.6 923,108 + -0.3 923,108 + +1.5 923,108 + +1.1 923,108 + -1.8 923,108 + +0.5 923,109 - +1.0 923,159 - +0.3 923,168 + +0.5 923,169 - -0.3 923,172 + -0.4 923,172 + +0.1 923,173 - -1.1 923,173 - -0.3 923,388 - Psyr_0817 0.35 -1.0 923,588 + Psyr_0817 0.71 -0.5 923,589 - Psyr_0817 0.71 -2.3 923,653 + Psyr_0817 0.83 +0.0 923,654 - Psyr_0817 0.83 -1.2 923,654 - Psyr_0817 0.83 -0.7 923,654 - Psyr_0817 0.83 -0.9 923,654 - Psyr_0817 0.83 +0.5 923,779 - +0.3 923,976 - Psyr_0818 0.26 +0.8
Or see this region's nucleotide sequence