Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0404

Experiment: MBOA 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0403 and Psyr_0404 overlap by 1 nucleotidesPsyr_0404 and Psyr_0405 overlap by 4 nucleotidesPsyr_0405 and Psyr_0406 overlap by 4 nucleotides Psyr_0403: Psyr_0403 - Type IV pilus assembly protein PilM, at 433,624 to 434,688 _0403 Psyr_0404: Psyr_0404 - Fimbrial assembly, at 434,688 to 435,263 _0404 Psyr_0405: Psyr_0405 - Pilus assembly protein, PilO, at 435,260 to 435,883 _0405 Psyr_0406: Psyr_0406 - Pilus assembly protein, PilQ, at 435,880 to 436,407 _0406 Position (kb) 434 435 436Strain fitness (log2 ratio) -2 -1 0 1at 433.723 kb on + strandat 433.745 kb on + strand, within Psyr_0403at 433.746 kb on - strand, within Psyr_0403at 433.746 kb on - strand, within Psyr_0403at 433.963 kb on + strand, within Psyr_0403at 433.963 kb on + strand, within Psyr_0403at 433.963 kb on + strand, within Psyr_0403at 433.963 kb on + strand, within Psyr_0403at 433.963 kb on + strand, within Psyr_0403at 433.963 kb on + strand, within Psyr_0403at 433.963 kb on + strand, within Psyr_0403at 433.963 kb on + strand, within Psyr_0403at 433.963 kb on + strand, within Psyr_0403at 433.963 kb on + strand, within Psyr_0403at 433.964 kb on - strand, within Psyr_0403at 433.964 kb on - strand, within Psyr_0403at 433.964 kb on - strand, within Psyr_0403at 433.964 kb on - strand, within Psyr_0403at 433.964 kb on - strand, within Psyr_0403at 433.964 kb on - strand, within Psyr_0403at 434.272 kb on + strand, within Psyr_0403at 434.272 kb on + strand, within Psyr_0403at 434.272 kb on + strand, within Psyr_0403at 434.272 kb on + strand, within Psyr_0403at 434.272 kb on + strand, within Psyr_0403at 434.272 kb on + strand, within Psyr_0403at 434.272 kb on + strand, within Psyr_0403at 434.273 kb on - strand, within Psyr_0403at 434.273 kb on - strand, within Psyr_0403at 434.273 kb on - strand, within Psyr_0403at 434.389 kb on + strand, within Psyr_0403at 434.389 kb on + strand, within Psyr_0403at 434.389 kb on + strand, within Psyr_0403at 434.390 kb on - strand, within Psyr_0403at 434.390 kb on - strand, within Psyr_0403at 434.390 kb on - strand, within Psyr_0403at 434.390 kb on - strand, within Psyr_0403at 434.476 kb on + strand, within Psyr_0403at 434.476 kb on + strand, within Psyr_0403at 434.477 kb on - strand, within Psyr_0403at 434.477 kb on - strand, within Psyr_0403at 434.477 kb on - strand, within Psyr_0403at 434.704 kb on + strandat 434.704 kb on + strandat 434.704 kb on + strandat 434.704 kb on + strandat 434.704 kb on + strandat 434.704 kb on + strandat 434.705 kb on - strandat 434.705 kb on - strandat 434.705 kb on - strandat 434.705 kb on - strandat 434.705 kb on - strandat 434.705 kb on - strandat 434.811 kb on + strand, within Psyr_0404at 434.812 kb on - strand, within Psyr_0404at 435.027 kb on + strand, within Psyr_0404at 435.028 kb on - strand, within Psyr_0404at 435.028 kb on - strand, within Psyr_0404at 435.028 kb on - strand, within Psyr_0404at 435.030 kb on + strand, within Psyr_0404at 435.214 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.265 kb on + strandat 435.266 kb on - strandat 435.266 kb on - strandat 435.266 kb on - strandat 435.266 kb on - strandat 435.266 kb on - strandat 435.266 kb on - strandat 435.266 kb on - strandat 435.266 kb on - strandat 435.398 kb on + strand, within Psyr_0405at 435.398 kb on + strand, within Psyr_0405at 435.398 kb on + strand, within Psyr_0405at 435.399 kb on - strand, within Psyr_0405at 435.512 kb on + strand, within Psyr_0405at 435.513 kb on - strand, within Psyr_0405at 435.680 kb on + strand, within Psyr_0405at 435.680 kb on + strand, within Psyr_0405at 435.680 kb on + strand, within Psyr_0405at 435.680 kb on + strand, within Psyr_0405at 435.681 kb on - strand, within Psyr_0405at 435.852 kb on - strandat 435.858 kb on - strandat 435.858 kb on - strandat 436.048 kb on + strand, within Psyr_0406at 436.048 kb on + strand, within Psyr_0406at 436.048 kb on + strand, within Psyr_0406at 436.048 kb on + strand, within Psyr_0406at 436.049 kb on - strand, within Psyr_0406at 436.049 kb on - strand, within Psyr_0406at 436.049 kb on - strand, within Psyr_0406

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Per-strain Table

Position Strand Gene LocusTag Fraction MBOA 0.5 mM
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433,723 + -0.3
433,745 + Psyr_0403 0.11 -1.2
433,746 - Psyr_0403 0.11 -0.6
433,746 - Psyr_0403 0.11 +0.5
433,963 + Psyr_0403 0.32 +0.1
433,963 + Psyr_0403 0.32 -0.3
433,963 + Psyr_0403 0.32 -0.1
433,963 + Psyr_0403 0.32 -0.3
433,963 + Psyr_0403 0.32 -0.4
433,963 + Psyr_0403 0.32 +1.1
433,963 + Psyr_0403 0.32 -2.3
433,963 + Psyr_0403 0.32 +0.5
433,963 + Psyr_0403 0.32 -0.7
433,963 + Psyr_0403 0.32 -0.9
433,964 - Psyr_0403 0.32 +0.1
433,964 - Psyr_0403 0.32 -0.7
433,964 - Psyr_0403 0.32 +1.1
433,964 - Psyr_0403 0.32 -0.6
433,964 - Psyr_0403 0.32 -1.5
433,964 - Psyr_0403 0.32 +0.1
434,272 + Psyr_0403 0.61 -0.3
434,272 + Psyr_0403 0.61 -0.0
434,272 + Psyr_0403 0.61 -0.2
434,272 + Psyr_0403 0.61 -0.5
434,272 + Psyr_0403 0.61 +0.1
434,272 + Psyr_0403 0.61 +0.1
434,272 + Psyr_0403 0.61 +0.1
434,273 - Psyr_0403 0.61 -1.1
434,273 - Psyr_0403 0.61 +0.7
434,273 - Psyr_0403 0.61 +0.3
434,389 + Psyr_0403 0.72 -0.6
434,389 + Psyr_0403 0.72 -0.1
434,389 + Psyr_0403 0.72 +0.2
434,390 - Psyr_0403 0.72 -0.3
434,390 - Psyr_0403 0.72 -1.8
434,390 - Psyr_0403 0.72 -0.5
434,390 - Psyr_0403 0.72 -1.4
434,476 + Psyr_0403 0.80 -0.5
434,476 + Psyr_0403 0.80 +0.1
434,477 - Psyr_0403 0.80 +0.1
434,477 - Psyr_0403 0.80 +0.6
434,477 - Psyr_0403 0.80 +0.2
434,704 + +0.2
434,704 + +0.9
434,704 + -1.0
434,704 + +0.0
434,704 + +1.0
434,704 + +0.6
434,705 - -0.3
434,705 - -1.7
434,705 - +0.1
434,705 - -0.3
434,705 - -0.6
434,705 - +1.5
434,811 + Psyr_0404 0.21 -1.6
434,812 - Psyr_0404 0.22 -1.4
435,027 + Psyr_0404 0.59 -0.1
435,028 - Psyr_0404 0.59 +0.2
435,028 - Psyr_0404 0.59 -1.0
435,028 - Psyr_0404 0.59 +1.2
435,030 + Psyr_0404 0.59 +1.1
435,214 + -0.0
435,265 + +0.2
435,265 + -0.8
435,265 + +1.3
435,265 + -1.7
435,265 + -0.7
435,265 + +0.2
435,265 + +0.4
435,265 + +0.5
435,265 + -0.2
435,265 + -0.2
435,265 + +0.2
435,265 + -1.8
435,265 + +0.3
435,265 + -0.5
435,265 + +0.5
435,265 + +0.4
435,265 + +0.5
435,266 - -0.1
435,266 - -0.9
435,266 - +0.9
435,266 - -0.9
435,266 - +1.1
435,266 - -0.9
435,266 - -0.7
435,266 - +0.2
435,398 + Psyr_0405 0.22 -0.4
435,398 + Psyr_0405 0.22 +0.2
435,398 + Psyr_0405 0.22 -0.9
435,399 - Psyr_0405 0.22 -0.6
435,512 + Psyr_0405 0.40 -0.4
435,513 - Psyr_0405 0.41 -0.9
435,680 + Psyr_0405 0.67 -0.7
435,680 + Psyr_0405 0.67 +0.4
435,680 + Psyr_0405 0.67 -0.5
435,680 + Psyr_0405 0.67 -0.6
435,681 - Psyr_0405 0.67 -1.9
435,852 - +0.8
435,858 - -0.1
435,858 - -0.5
436,048 + Psyr_0406 0.32 +0.8
436,048 + Psyr_0406 0.32 -1.3
436,048 + Psyr_0406 0.32 +0.1
436,048 + Psyr_0406 0.32 +0.3
436,049 - Psyr_0406 0.32 +0.7
436,049 - Psyr_0406 0.32 -1.3
436,049 - Psyr_0406 0.32 +0.2

Or see this region's nucleotide sequence