Experiment: MBOA 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0489 and Psyr_0490 are separated by 14 nucleotides Psyr_0490 and Psyr_0491 are separated by 50 nucleotides Psyr_0491 and Psyr_0492 are separated by 47 nucleotides
Psyr_0489: Psyr_0489 - Response regulator receiver, at 525,931 to 526,296
_0489
Psyr_0490: Psyr_0490 - CheW-like protein, at 526,311 to 526,850
_0490
Psyr_0491: Psyr_0491 - chemotaxis sensory transducer, at 526,901 to 528,943
_0491
Psyr_0492: Psyr_0492 - Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt, at 528,991 to 534,969
_0492
Position (kb) 526
527
528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 525.912 kb on - strand at 525.912 kb on - strand at 525.973 kb on + strand, within Psyr_0489 at 526.156 kb on - strand, within Psyr_0489 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.651 kb on + strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.652 kb on - strand, within Psyr_0490 at 526.745 kb on + strand, within Psyr_0490 at 526.745 kb on + strand, within Psyr_0490 at 526.746 kb on - strand, within Psyr_0490 at 526.746 kb on - strand, within Psyr_0490 at 526.773 kb on - strand, within Psyr_0490 at 526.848 kb on + strand at 526.848 kb on + strand at 526.849 kb on - strand at 526.849 kb on - strand at 526.849 kb on - strand at 526.907 kb on - strand at 526.909 kb on + strand at 526.909 kb on + strand at 526.909 kb on + strand at 526.909 kb on + strand at 526.951 kb on + strand at 526.952 kb on - strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.042 kb on + strand at 527.043 kb on - strand at 527.230 kb on - strand, within Psyr_0491 at 527.599 kb on - strand, within Psyr_0491 at 527.709 kb on - strand, within Psyr_0491 at 528.056 kb on + strand, within Psyr_0491 at 528.056 kb on + strand, within Psyr_0491 at 528.057 kb on - strand, within Psyr_0491 at 528.057 kb on - strand, within Psyr_0491 at 528.057 kb on - strand, within Psyr_0491 at 528.742 kb on + strand at 528.742 kb on + strand at 528.742 kb on + strand at 528.742 kb on + strand at 528.743 kb on - strand at 528.946 kb on + strand at 528.946 kb on + strand at 528.947 kb on - strand at 528.947 kb on - strand at 529.009 kb on + strand at 529.009 kb on + strand at 529.009 kb on + strand at 529.010 kb on - strand at 529.010 kb on - strand at 529.013 kb on + strand at 529.013 kb on + strand at 529.013 kb on + strand at 529.014 kb on - strand at 529.014 kb on - strand at 529.014 kb on - strand at 529.014 kb on - strand at 529.171 kb on + strand at 529.171 kb on + strand at 529.171 kb on + strand at 529.172 kb on - strand at 529.295 kb on - strand at 529.565 kb on - strand at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.801 kb on + strand, within Psyr_0492 at 529.802 kb on - strand, within Psyr_0492 at 529.802 kb on - strand, within Psyr_0492 at 529.802 kb on - strand, within Psyr_0492 at 529.802 kb on - strand, within Psyr_0492 at 529.802 kb on - strand, within Psyr_0492 at 529.855 kb on + strand, within Psyr_0492 at 529.855 kb on + strand, within Psyr_0492
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 0.5 mM remove 525,912 - +0.2 525,912 - +1.0 525,973 + Psyr_0489 0.11 -1.5 526,156 - Psyr_0489 0.61 -0.8 526,651 + Psyr_0490 0.63 -0.0 526,651 + Psyr_0490 0.63 +1.3 526,651 + Psyr_0490 0.63 -0.3 526,651 + Psyr_0490 0.63 -0.7 526,651 + Psyr_0490 0.63 -0.5 526,651 + Psyr_0490 0.63 -1.5 526,651 + Psyr_0490 0.63 -0.3 526,651 + Psyr_0490 0.63 -0.0 526,652 - Psyr_0490 0.63 -0.1 526,652 - Psyr_0490 0.63 -0.1 526,652 - Psyr_0490 0.63 -1.5 526,652 - Psyr_0490 0.63 -1.2 526,652 - Psyr_0490 0.63 -0.8 526,745 + Psyr_0490 0.80 +0.8 526,745 + Psyr_0490 0.80 -1.9 526,746 - Psyr_0490 0.81 +0.1 526,746 - Psyr_0490 0.81 -1.3 526,773 - Psyr_0490 0.86 -0.1 526,848 + +0.8 526,848 + +0.4 526,849 - -0.3 526,849 - +1.8 526,849 - -0.6 526,907 - -0.3 526,909 + +1.2 526,909 + +0.1 526,909 + +0.1 526,909 + +1.0 526,951 + +0.6 526,952 - +1.3 527,042 + +0.6 527,042 + +0.1 527,042 + -0.7 527,042 + -0.4 527,042 + -0.1 527,042 + +0.5 527,043 - +1.1 527,230 - Psyr_0491 0.16 +0.3 527,599 - Psyr_0491 0.34 -0.1 527,709 - Psyr_0491 0.40 +0.3 528,056 + Psyr_0491 0.57 -0.5 528,056 + Psyr_0491 0.57 +0.7 528,057 - Psyr_0491 0.57 -0.9 528,057 - Psyr_0491 0.57 +0.4 528,057 - Psyr_0491 0.57 -1.8 528,742 + -0.7 528,742 + -0.3 528,742 + +2.8 528,742 + -1.1 528,743 - +0.1 528,946 + +0.3 528,946 + -0.6 528,947 - -3.2 528,947 - -0.3 529,009 + -1.1 529,009 + +1.1 529,009 + +1.5 529,010 - -0.7 529,010 - +1.1 529,013 + -0.3 529,013 + -0.9 529,013 + +0.2 529,014 - -0.4 529,014 - +0.3 529,014 - -1.2 529,014 - -0.7 529,171 + +0.2 529,171 + +0.7 529,171 + -1.3 529,172 - +0.7 529,295 - -0.3 529,565 - -0.6 529,801 + Psyr_0492 0.14 -0.0 529,801 + Psyr_0492 0.14 +0.7 529,801 + Psyr_0492 0.14 -1.4 529,801 + Psyr_0492 0.14 -0.2 529,801 + Psyr_0492 0.14 -1.1 529,801 + Psyr_0492 0.14 -0.1 529,801 + Psyr_0492 0.14 -0.1 529,801 + Psyr_0492 0.14 -1.0 529,801 + Psyr_0492 0.14 -0.3 529,801 + Psyr_0492 0.14 -2.1 529,801 + Psyr_0492 0.14 +0.5 529,801 + Psyr_0492 0.14 -0.2 529,802 - Psyr_0492 0.14 +0.1 529,802 - Psyr_0492 0.14 +0.9 529,802 - Psyr_0492 0.14 +0.7 529,802 - Psyr_0492 0.14 +0.8 529,802 - Psyr_0492 0.14 +1.7 529,855 + Psyr_0492 0.14 -0.1 529,855 + Psyr_0492 0.14 -1.3
Or see this region's nucleotide sequence