Experiment: MBOA 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0273 and Psyr_0274 overlap by 1 nucleotides Psyr_0274 and Psyr_0275 are separated by 234 nucleotides Psyr_0275 and Psyr_0276 are separated by 67 nucleotides Psyr_0276 and Psyr_0277 overlap by 1 nucleotides
Psyr_0273: Psyr_0273 - Integrase, catalytic region, at 291,899 to 292,735
_0273
Psyr_0274: Psyr_0274 - ISPsy9, transposase OrfA, at 292,735 to 293,274
_0274
Psyr_0275: Psyr_0275 - Periplasmic solute binding protein, at 293,509 to 294,450
_0275
Psyr_0276: Psyr_0276 - zinc uptake regulation protein, putative, at 294,518 to 295,000
_0276
Psyr_0277: Psyr_0277 - ABC transporter, at 295,000 to 295,788
_0277
Position (kb) 293
294
295 Strain fitness (log2 ratio) -2
-1
0
1 at 293.492 kb on + strand at 293.492 kb on + strand at 293.492 kb on + strand at 293.492 kb on + strand at 293.492 kb on + strand at 293.492 kb on + strand at 293.493 kb on - strand at 293.493 kb on - strand at 293.493 kb on - strand at 293.493 kb on - strand at 293.517 kb on + strand at 293.518 kb on - strand at 293.518 kb on - strand at 293.591 kb on + strand at 293.683 kb on + strand, within Psyr_0275 at 293.807 kb on + strand, within Psyr_0275 at 293.827 kb on + strand, within Psyr_0275 at 293.828 kb on - strand, within Psyr_0275 at 293.834 kb on + strand, within Psyr_0275 at 293.834 kb on + strand, within Psyr_0275 at 293.834 kb on + strand, within Psyr_0275 at 293.834 kb on + strand, within Psyr_0275 at 293.835 kb on - strand, within Psyr_0275 at 293.835 kb on - strand, within Psyr_0275 at 293.835 kb on - strand, within Psyr_0275 at 293.835 kb on - strand, within Psyr_0275 at 293.835 kb on - strand, within Psyr_0275 at 293.835 kb on - strand, within Psyr_0275 at 294.238 kb on + strand, within Psyr_0275 at 294.239 kb on - strand, within Psyr_0275 at 294.239 kb on - strand, within Psyr_0275 at 294.248 kb on - strand, within Psyr_0275 at 294.270 kb on - strand, within Psyr_0275 at 294.270 kb on - strand, within Psyr_0275 at 294.270 kb on - strand, within Psyr_0275 at 294.273 kb on + strand, within Psyr_0275 at 294.312 kb on + strand, within Psyr_0275 at 294.328 kb on + strand, within Psyr_0275 at 294.329 kb on - strand, within Psyr_0275 at 294.436 kb on + strand at 294.437 kb on - strand at 294.463 kb on + strand at 294.464 kb on - strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.485 kb on + strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.486 kb on - strand at 294.504 kb on + strand at 294.526 kb on + strand at 294.598 kb on - strand, within Psyr_0276 at 294.598 kb on - strand, within Psyr_0276 at 294.598 kb on - strand, within Psyr_0276 at 294.683 kb on + strand, within Psyr_0276 at 294.683 kb on + strand, within Psyr_0276 at 294.976 kb on - strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.016 kb on + strand at 295.017 kb on - strand at 295.017 kb on - strand at 295.017 kb on - strand at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.213 kb on + strand, within Psyr_0277 at 295.214 kb on - strand, within Psyr_0277
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 0.5 mM remove 293,492 + +0.4 293,492 + -1.5 293,492 + -0.7 293,492 + -0.2 293,492 + -0.3 293,492 + +0.2 293,493 - -0.3 293,493 - +0.3 293,493 - +0.1 293,493 - +0.5 293,517 + +0.4 293,518 - +0.6 293,518 - -1.5 293,591 + -1.0 293,683 + Psyr_0275 0.18 -1.2 293,807 + Psyr_0275 0.32 -0.5 293,827 + Psyr_0275 0.34 -1.8 293,828 - Psyr_0275 0.34 +0.4 293,834 + Psyr_0275 0.35 -0.7 293,834 + Psyr_0275 0.35 -1.1 293,834 + Psyr_0275 0.35 -1.2 293,834 + Psyr_0275 0.35 -0.1 293,835 - Psyr_0275 0.35 -0.9 293,835 - Psyr_0275 0.35 +1.3 293,835 - Psyr_0275 0.35 -0.3 293,835 - Psyr_0275 0.35 -0.6 293,835 - Psyr_0275 0.35 -1.1 293,835 - Psyr_0275 0.35 -0.9 294,238 + Psyr_0275 0.77 -0.4 294,239 - Psyr_0275 0.77 -1.8 294,239 - Psyr_0275 0.77 -0.1 294,248 - Psyr_0275 0.78 -1.0 294,270 - Psyr_0275 0.81 +1.1 294,270 - Psyr_0275 0.81 -1.2 294,270 - Psyr_0275 0.81 -2.1 294,273 + Psyr_0275 0.81 -1.6 294,312 + Psyr_0275 0.85 +0.7 294,328 + Psyr_0275 0.87 -1.4 294,329 - Psyr_0275 0.87 -0.4 294,436 + -0.5 294,437 - -0.3 294,463 + -1.6 294,464 - +1.4 294,485 + -1.0 294,485 + -0.2 294,485 + -0.4 294,485 + +0.1 294,485 + -1.5 294,485 + -1.3 294,485 + -0.1 294,485 + -0.0 294,486 - -0.9 294,486 - -1.2 294,486 - -2.4 294,486 - +0.7 294,486 - -0.9 294,486 - +0.3 294,504 + -0.4 294,526 + -0.5 294,598 - Psyr_0276 0.17 +0.2 294,598 - Psyr_0276 0.17 -1.6 294,598 - Psyr_0276 0.17 -0.6 294,683 + Psyr_0276 0.34 -0.2 294,683 + Psyr_0276 0.34 -0.2 294,976 - +0.1 295,016 + +0.7 295,016 + -1.3 295,016 + +1.0 295,016 + -0.1 295,017 - +0.2 295,017 - -1.1 295,017 - -0.1 295,213 + Psyr_0277 0.27 +0.7 295,213 + Psyr_0277 0.27 -1.5 295,213 + Psyr_0277 0.27 -0.1 295,213 + Psyr_0277 0.27 -0.3 295,213 + Psyr_0277 0.27 -1.6 295,214 - Psyr_0277 0.27 -0.7
Or see this region's nucleotide sequence