Experiment: MBOA 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0230 and Psyr_0231 are separated by 175 nucleotides Psyr_0231 and Psyr_0232 are separated by 2 nucleotides Psyr_0232 and Psyr_0233 are separated by 105 nucleotides Psyr_0233 and Psyr_0234 are separated by 7 nucleotides
Psyr_0230: Psyr_0230 - transcriptional regulator, GntR family, at 244,835 to 246,256
_0230
Psyr_0231: Psyr_0231 - conserved hypothetical protein, at 246,432 to 246,683
_0231
Psyr_0232: Psyr_0232 - gamma-glutamylputrescine oxidase, at 246,686 to 247,999
_0232
Psyr_0233: Psyr_0233 - Protein of unknown function UPF0153, at 248,105 to 248,458
_0233
Psyr_0234: Psyr_0234 - transcriptional regulator, AsnC family, at 248,466 to 248,954
_0234
Position (kb) 246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 245.820 kb on + strand, within Psyr_0230 at 245.820 kb on + strand, within Psyr_0230 at 245.821 kb on - strand, within Psyr_0230 at 245.835 kb on + strand, within Psyr_0230 at 245.995 kb on + strand, within Psyr_0230 at 246.067 kb on - strand, within Psyr_0230 at 246.137 kb on - strand at 246.137 kb on - strand at 246.199 kb on - strand at 246.199 kb on - strand at 246.199 kb on - strand at 246.246 kb on + strand at 246.246 kb on + strand at 246.246 kb on + strand at 246.246 kb on + strand at 246.246 kb on + strand at 246.247 kb on - strand at 246.261 kb on + strand at 246.310 kb on - strand at 246.311 kb on + strand at 246.312 kb on - strand at 246.312 kb on - strand at 246.312 kb on - strand at 246.350 kb on + strand at 246.351 kb on - strand at 246.562 kb on - strand, within Psyr_0231 at 246.562 kb on - strand, within Psyr_0231 at 246.562 kb on - strand, within Psyr_0231 at 246.876 kb on + strand, within Psyr_0232 at 246.876 kb on + strand, within Psyr_0232 at 246.877 kb on - strand, within Psyr_0232 at 246.877 kb on - strand, within Psyr_0232 at 246.888 kb on + strand, within Psyr_0232 at 246.888 kb on + strand, within Psyr_0232 at 246.888 kb on + strand, within Psyr_0232 at 246.889 kb on - strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.893 kb on + strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.894 kb on - strand, within Psyr_0232 at 246.920 kb on + strand, within Psyr_0232 at 246.921 kb on - strand, within Psyr_0232 at 247.026 kb on + strand, within Psyr_0232 at 247.026 kb on + strand, within Psyr_0232 at 247.026 kb on + strand, within Psyr_0232 at 247.027 kb on - strand, within Psyr_0232 at 247.027 kb on - strand, within Psyr_0232 at 247.027 kb on - strand, within Psyr_0232 at 247.107 kb on + strand, within Psyr_0232 at 247.107 kb on + strand, within Psyr_0232 at 247.108 kb on - strand, within Psyr_0232 at 247.108 kb on - strand, within Psyr_0232 at 247.110 kb on + strand, within Psyr_0232 at 247.110 kb on + strand, within Psyr_0232 at 247.111 kb on - strand, within Psyr_0232 at 247.137 kb on - strand, within Psyr_0232 at 247.137 kb on - strand, within Psyr_0232 at 247.203 kb on + strand, within Psyr_0232 at 247.203 kb on + strand, within Psyr_0232 at 247.203 kb on + strand, within Psyr_0232 at 247.203 kb on + strand, within Psyr_0232 at 247.203 kb on + strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.204 kb on - strand, within Psyr_0232 at 247.257 kb on + strand, within Psyr_0232 at 247.257 kb on + strand, within Psyr_0232 at 247.310 kb on - strand, within Psyr_0232 at 247.461 kb on + strand, within Psyr_0232 at 247.944 kb on + strand at 247.947 kb on + strand at 247.947 kb on + strand at 247.947 kb on + strand at 247.947 kb on + strand at 247.947 kb on + strand at 247.948 kb on - strand at 247.948 kb on - strand at 248.280 kb on + strand, within Psyr_0233 at 248.280 kb on + strand, within Psyr_0233 at 248.280 kb on + strand, within Psyr_0233 at 248.280 kb on + strand, within Psyr_0233 at 248.281 kb on - strand, within Psyr_0233 at 248.281 kb on - strand, within Psyr_0233 at 248.281 kb on - strand, within Psyr_0233 at 248.309 kb on + strand, within Psyr_0233 at 248.309 kb on + strand, within Psyr_0233 at 248.309 kb on + strand, within Psyr_0233 at 248.310 kb on - strand, within Psyr_0233 at 248.310 kb on - strand, within Psyr_0233 at 248.310 kb on - strand, within Psyr_0233 at 248.418 kb on + strand, within Psyr_0233 at 248.418 kb on + strand, within Psyr_0233 at 248.418 kb on + strand, within Psyr_0233 at 248.419 kb on - strand, within Psyr_0233 at 248.419 kb on - strand, within Psyr_0233 at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.426 kb on + strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.427 kb on - strand at 248.428 kb on + strand at 248.428 kb on + strand at 248.428 kb on + strand at 248.428 kb on + strand at 248.428 kb on + strand at 248.428 kb on + strand at 248.428 kb on + strand at 248.428 kb on + strand at 248.429 kb on - strand at 248.429 kb on - strand at 248.429 kb on - strand at 248.429 kb on - strand at 248.429 kb on - strand at 248.429 kb on - strand at 248.429 kb on - strand at 248.429 kb on - strand at 248.429 kb on - strand at 248.448 kb on + strand at 248.448 kb on + strand at 248.449 kb on - strand at 248.449 kb on - strand at 248.454 kb on + strand at 248.454 kb on + strand at 248.454 kb on + strand at 248.454 kb on + strand at 248.454 kb on + strand at 248.454 kb on + strand at 248.454 kb on + strand at 248.455 kb on - strand at 248.455 kb on - strand at 248.455 kb on - strand at 248.455 kb on - strand at 248.455 kb on - strand at 248.455 kb on - strand at 248.456 kb on + strand at 248.456 kb on + strand at 248.456 kb on + strand at 248.456 kb on + strand at 248.456 kb on + strand at 248.457 kb on - strand at 248.457 kb on - strand at 248.518 kb on + strand, within Psyr_0234 at 248.518 kb on + strand, within Psyr_0234 at 248.518 kb on + strand, within Psyr_0234 at 248.518 kb on + strand, within Psyr_0234 at 248.518 kb on + strand, within Psyr_0234 at 248.518 kb on + strand, within Psyr_0234 at 248.518 kb on + strand, within Psyr_0234 at 248.518 kb on + strand, within Psyr_0234 at 248.518 kb on + strand, within Psyr_0234 at 248.518 kb on + strand, within Psyr_0234 at 248.518 kb on + strand, within Psyr_0234 at 248.518 kb on + strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.519 kb on - strand, within Psyr_0234 at 248.614 kb on + strand, within Psyr_0234 at 248.615 kb on - strand, within Psyr_0234 at 248.707 kb on + strand, within Psyr_0234 at 248.707 kb on + strand, within Psyr_0234 at 248.707 kb on + strand, within Psyr_0234 at 248.707 kb on + strand, within Psyr_0234 at 248.707 kb on + strand, within Psyr_0234 at 248.708 kb on - strand, within Psyr_0234 at 248.708 kb on - strand, within Psyr_0234 at 248.708 kb on - strand, within Psyr_0234 at 248.708 kb on - strand, within Psyr_0234 at 248.708 kb on - strand, within Psyr_0234 at 248.835 kb on - strand, within Psyr_0234 at 248.913 kb on + strand at 248.913 kb on + strand at 248.913 kb on + strand at 248.913 kb on + strand at 248.913 kb on + strand at 248.913 kb on + strand at 248.913 kb on + strand at 248.913 kb on + strand at 248.913 kb on + strand at 248.913 kb on + strand at 248.913 kb on + strand at 248.914 kb on - strand at 248.914 kb on - strand at 248.914 kb on - strand at 248.914 kb on - strand at 248.914 kb on - strand at 248.914 kb on - strand at 248.914 kb on - strand at 248.914 kb on - strand at 248.914 kb on - strand at 248.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MBOA 0.5 mM remove 245,820 + Psyr_0230 0.69 -0.5 245,820 + Psyr_0230 0.69 +1.1 245,821 - Psyr_0230 0.69 -0.7 245,835 + Psyr_0230 0.70 +0.9 245,995 + Psyr_0230 0.82 +0.1 246,067 - Psyr_0230 0.87 -0.8 246,137 - -0.3 246,137 - +0.6 246,199 - +0.6 246,199 - +0.4 246,199 - -0.6 246,246 + -0.0 246,246 + +0.7 246,246 + -0.5 246,246 + -0.6 246,246 + +0.4 246,247 - +0.0 246,261 + +0.6 246,310 - -0.5 246,311 + -0.6 246,312 - +0.1 246,312 - -1.2 246,312 - -0.2 246,350 + -0.4 246,351 - -0.1 246,562 - Psyr_0231 0.52 +1.1 246,562 - Psyr_0231 0.52 -0.8 246,562 - Psyr_0231 0.52 +0.3 246,876 + Psyr_0232 0.14 -1.6 246,876 + Psyr_0232 0.14 -1.4 246,877 - Psyr_0232 0.15 -2.5 246,877 - Psyr_0232 0.15 +0.0 246,888 + Psyr_0232 0.15 -0.7 246,888 + Psyr_0232 0.15 -0.3 246,888 + Psyr_0232 0.15 -1.6 246,889 - Psyr_0232 0.15 +0.1 246,893 + Psyr_0232 0.16 +1.1 246,893 + Psyr_0232 0.16 -0.1 246,893 + Psyr_0232 0.16 -0.7 246,893 + Psyr_0232 0.16 -1.0 246,893 + Psyr_0232 0.16 -1.8 246,893 + Psyr_0232 0.16 -1.4 246,893 + Psyr_0232 0.16 +0.4 246,894 - Psyr_0232 0.16 +0.4 246,894 - Psyr_0232 0.16 -0.3 246,894 - Psyr_0232 0.16 +1.1 246,894 - Psyr_0232 0.16 -1.5 246,894 - Psyr_0232 0.16 +1.6 246,894 - Psyr_0232 0.16 +0.7 246,894 - Psyr_0232 0.16 +0.3 246,920 + Psyr_0232 0.18 -0.8 246,921 - Psyr_0232 0.18 -1.7 247,026 + Psyr_0232 0.26 -0.2 247,026 + Psyr_0232 0.26 +0.1 247,026 + Psyr_0232 0.26 -1.7 247,027 - Psyr_0232 0.26 -0.0 247,027 - Psyr_0232 0.26 -0.8 247,027 - Psyr_0232 0.26 -0.3 247,107 + Psyr_0232 0.32 +1.8 247,107 + Psyr_0232 0.32 -0.5 247,108 - Psyr_0232 0.32 +0.7 247,108 - Psyr_0232 0.32 -0.5 247,110 + Psyr_0232 0.32 -0.7 247,110 + Psyr_0232 0.32 +0.3 247,111 - Psyr_0232 0.32 +0.1 247,137 - Psyr_0232 0.34 -0.8 247,137 - Psyr_0232 0.34 -0.3 247,203 + Psyr_0232 0.39 +0.4 247,203 + Psyr_0232 0.39 +0.5 247,203 + Psyr_0232 0.39 -0.3 247,203 + Psyr_0232 0.39 +1.1 247,203 + Psyr_0232 0.39 -1.1 247,204 - Psyr_0232 0.39 -1.3 247,204 - Psyr_0232 0.39 -1.2 247,204 - Psyr_0232 0.39 -1.1 247,204 - Psyr_0232 0.39 -2.1 247,204 - Psyr_0232 0.39 -0.0 247,204 - Psyr_0232 0.39 -1.7 247,204 - Psyr_0232 0.39 -1.5 247,204 - Psyr_0232 0.39 +0.1 247,204 - Psyr_0232 0.39 -0.4 247,257 + Psyr_0232 0.43 +0.4 247,257 + Psyr_0232 0.43 -0.5 247,310 - Psyr_0232 0.47 +0.2 247,461 + Psyr_0232 0.59 +0.9 247,944 + -0.5 247,947 + +0.6 247,947 + -0.9 247,947 + -1.1 247,947 + -0.6 247,947 + -0.6 247,948 - +0.1 247,948 - -0.3 248,280 + Psyr_0233 0.49 +1.3 248,280 + Psyr_0233 0.49 -1.2 248,280 + Psyr_0233 0.49 -1.0 248,280 + Psyr_0233 0.49 +0.0 248,281 - Psyr_0233 0.50 -0.6 248,281 - Psyr_0233 0.50 +0.9 248,281 - Psyr_0233 0.50 -0.5 248,309 + Psyr_0233 0.58 +0.3 248,309 + Psyr_0233 0.58 -0.2 248,309 + Psyr_0233 0.58 -1.7 248,310 - Psyr_0233 0.58 -0.2 248,310 - Psyr_0233 0.58 -1.1 248,310 - Psyr_0233 0.58 -0.6 248,418 + Psyr_0233 0.88 +0.3 248,418 + Psyr_0233 0.88 +0.1 248,418 + Psyr_0233 0.88 -0.7 248,419 - Psyr_0233 0.89 +0.4 248,419 - Psyr_0233 0.89 +0.9 248,426 + +0.6 248,426 + -0.1 248,426 + +0.8 248,426 + -0.6 248,426 + -0.2 248,426 + -0.8 248,426 + +2.4 248,426 + -2.3 248,426 + -0.9 248,426 + -0.9 248,426 + -0.1 248,426 + +0.4 248,426 + +1.2 248,426 + +0.7 248,427 - -0.9 248,427 - +0.6 248,427 - -0.1 248,427 - -0.7 248,427 - -1.0 248,427 - -0.8 248,427 - -1.6 248,427 - -0.1 248,427 - -0.3 248,427 - -1.7 248,427 - -0.4 248,427 - -0.4 248,427 - +0.3 248,427 - +0.5 248,428 + +0.3 248,428 + +0.7 248,428 + +2.1 248,428 + -1.3 248,428 + +0.0 248,428 + -0.1 248,428 + -0.8 248,428 + +0.5 248,429 - -0.9 248,429 - +1.1 248,429 - +1.3 248,429 - +0.6 248,429 - -0.3 248,429 - -0.3 248,429 - -1.2 248,429 - -0.8 248,429 - -1.1 248,448 + -0.1 248,448 + +0.1 248,449 - -0.9 248,449 - -0.9 248,454 + -1.6 248,454 + -0.6 248,454 + -0.3 248,454 + +0.7 248,454 + -0.2 248,454 + +0.0 248,454 + +0.1 248,455 - -0.1 248,455 - +0.5 248,455 - -0.6 248,455 - +0.7 248,455 - -0.1 248,455 - -0.4 248,456 + -2.5 248,456 + +0.6 248,456 + +0.5 248,456 + -0.9 248,456 + +0.6 248,457 - -0.1 248,457 - -0.6 248,518 + Psyr_0234 0.11 +0.4 248,518 + Psyr_0234 0.11 -1.2 248,518 + Psyr_0234 0.11 -1.0 248,518 + Psyr_0234 0.11 -0.7 248,518 + Psyr_0234 0.11 -0.7 248,518 + Psyr_0234 0.11 +0.7 248,518 + Psyr_0234 0.11 +0.7 248,518 + Psyr_0234 0.11 -0.7 248,518 + Psyr_0234 0.11 +0.5 248,518 + Psyr_0234 0.11 +0.5 248,518 + Psyr_0234 0.11 +0.8 248,518 + Psyr_0234 0.11 -0.6 248,519 - Psyr_0234 0.11 -0.2 248,519 - Psyr_0234 0.11 -0.5 248,519 - Psyr_0234 0.11 +0.3 248,519 - Psyr_0234 0.11 -1.5 248,519 - Psyr_0234 0.11 +0.4 248,519 - Psyr_0234 0.11 -1.1 248,519 - Psyr_0234 0.11 +0.7 248,519 - Psyr_0234 0.11 -0.6 248,519 - Psyr_0234 0.11 -0.4 248,519 - Psyr_0234 0.11 +0.4 248,519 - Psyr_0234 0.11 +0.1 248,519 - Psyr_0234 0.11 +1.2 248,614 + Psyr_0234 0.30 +0.0 248,615 - Psyr_0234 0.30 -1.0 248,707 + Psyr_0234 0.49 -0.0 248,707 + Psyr_0234 0.49 +0.4 248,707 + Psyr_0234 0.49 -2.3 248,707 + Psyr_0234 0.49 -0.6 248,707 + Psyr_0234 0.49 -0.4 248,708 - Psyr_0234 0.49 -0.4 248,708 - Psyr_0234 0.49 -1.2 248,708 - Psyr_0234 0.49 +1.3 248,708 - Psyr_0234 0.49 -1.2 248,708 - Psyr_0234 0.49 -1.3 248,835 - Psyr_0234 0.75 +0.5 248,913 + +0.8 248,913 + +0.7 248,913 + +0.5 248,913 + -2.8 248,913 + +0.4 248,913 + -0.1 248,913 + -0.9 248,913 + +0.1 248,913 + -0.6 248,913 + -1.1 248,913 + -0.1 248,914 - -0.5 248,914 - -1.3 248,914 - -0.9 248,914 - -0.3 248,914 - +1.4 248,914 - +0.3 248,914 - -0.2 248,914 - -0.9 248,914 - +0.6 248,914 - -0.7
Or see this region's nucleotide sequence