Experiment: DMSO
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4829 and Psyr_4830 are separated by 73 nucleotides Psyr_4830 and Psyr_4831 overlap by 4 nucleotides Psyr_4831 and Psyr_4832 are separated by 12 nucleotides
Psyr_4829: Psyr_4829 - Substrate-binding region of ABC-type glycine betaine transport system, at 5,731,830 to 5,732,798
_4829
Psyr_4830: Psyr_4830 - Binding-protein-dependent transport systems inner membrane component, at 5,732,872 to 5,733,723
_4830
Psyr_4831: Psyr_4831 - ABC transporter, at 5,733,720 to 5,734,550
_4831
Psyr_4832: Psyr_4832 - histidine ammonia-lyase, at 5,734,563 to 5,736,104
_4832
Position (kb) 5733
5734
5735 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5732.796 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.872 kb on - strand at 5732.872 kb on - strand at 5732.945 kb on - strand at 5732.982 kb on - strand, within Psyr_4830 at 5733.296 kb on - strand, within Psyr_4830 at 5733.296 kb on - strand, within Psyr_4830 at 5733.361 kb on + strand, within Psyr_4830 at 5733.361 kb on + strand, within Psyr_4830 at 5733.853 kb on + strand, within Psyr_4831 at 5733.854 kb on - strand, within Psyr_4831 at 5734.015 kb on - strand, within Psyr_4831 at 5734.187 kb on - strand, within Psyr_4831 at 5734.213 kb on - strand, within Psyr_4831 at 5734.249 kb on + strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.250 kb on - strand, within Psyr_4831 at 5734.472 kb on + strand at 5734.509 kb on + strand at 5734.510 kb on - strand at 5734.549 kb on - strand at 5734.893 kb on + strand, within Psyr_4832 at 5734.893 kb on + strand, within Psyr_4832 at 5734.893 kb on + strand, within Psyr_4832 at 5734.893 kb on + strand, within Psyr_4832 at 5734.893 kb on + strand, within Psyr_4832 at 5734.894 kb on - strand, within Psyr_4832 at 5734.894 kb on - strand, within Psyr_4832 at 5734.894 kb on - strand, within Psyr_4832 at 5734.999 kb on - strand, within Psyr_4832
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO remove 5,732,796 + +1.3 5,732,871 + -1.0 5,732,871 + +0.1 5,732,871 + -0.0 5,732,871 + +0.4 5,732,871 + -0.0 5,732,872 - +1.9 5,732,872 - -0.4 5,732,945 - -0.9 5,732,982 - Psyr_4830 0.13 -1.4 5,733,296 - Psyr_4830 0.50 +0.8 5,733,296 - Psyr_4830 0.50 -0.3 5,733,361 + Psyr_4830 0.57 -2.6 5,733,361 + Psyr_4830 0.57 -1.7 5,733,853 + Psyr_4831 0.16 -0.8 5,733,854 - Psyr_4831 0.16 +3.4 5,734,015 - Psyr_4831 0.35 -1.4 5,734,187 - Psyr_4831 0.56 -0.2 5,734,213 - Psyr_4831 0.59 -0.8 5,734,249 + Psyr_4831 0.64 +1.6 5,734,250 - Psyr_4831 0.64 +0.1 5,734,250 - Psyr_4831 0.64 -1.9 5,734,250 - Psyr_4831 0.64 +0.1 5,734,250 - Psyr_4831 0.64 -0.5 5,734,250 - Psyr_4831 0.64 +0.4 5,734,472 + -0.5 5,734,509 + +0.7 5,734,510 - +1.0 5,734,549 - +0.5 5,734,893 + Psyr_4832 0.21 +0.3 5,734,893 + Psyr_4832 0.21 +1.1 5,734,893 + Psyr_4832 0.21 -1.6 5,734,893 + Psyr_4832 0.21 +0.1 5,734,893 + Psyr_4832 0.21 -0.0 5,734,894 - Psyr_4832 0.21 -0.8 5,734,894 - Psyr_4832 0.21 +1.4 5,734,894 - Psyr_4832 0.21 +0.2 5,734,999 - Psyr_4832 0.28 -0.6
Or see this region's nucleotide sequence