Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3951

Experiment: DMSO

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3949 and Psyr_3950 are separated by 60 nucleotidesPsyr_3950 and Psyr_3951 overlap by 8 nucleotidesPsyr_3951 and Psyr_3952 overlap by 4 nucleotidesPsyr_3952 and Psyr_3953 are separated by 114 nucleotides Psyr_3949: Psyr_3949 - DNA replication and repair protein RecO, at 4,697,047 to 4,697,730 _3949 Psyr_3950: Psyr_3950 - Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era, at 4,697,791 to 4,698,693 _3950 Psyr_3951: Psyr_3951 - RNAse III, at 4,698,686 to 4,699,375 _3951 Psyr_3952: Psyr_3952 - conserved hypothetical protein, at 4,699,372 to 4,699,749 _3952 Psyr_3953: Psyr_3953 - signal peptidase I, Serine peptidase, MEROPS family S26A, at 4,699,864 to 4,700,718 _3953 Position (kb) 4698 4699 4700Strain fitness (log2 ratio) -2 -1 0 1at 4697.702 kb on + strandat 4697.702 kb on + strandat 4697.702 kb on + strandat 4697.702 kb on + strandat 4697.702 kb on + strandat 4697.702 kb on + strandat 4697.702 kb on + strandat 4697.702 kb on + strandat 4697.702 kb on + strandat 4697.702 kb on + strandat 4697.702 kb on + strandat 4697.703 kb on - strandat 4697.703 kb on - strandat 4697.703 kb on - strandat 4697.703 kb on - strandat 4697.703 kb on - strandat 4697.703 kb on - strandat 4697.793 kb on - strandat 4697.793 kb on - strandat 4698.792 kb on - strand, within Psyr_3951at 4699.452 kb on - strand, within Psyr_3952at 4699.514 kb on - strand, within Psyr_3952at 4699.554 kb on - strand, within Psyr_3952at 4699.635 kb on - strand, within Psyr_3952at 4699.635 kb on - strand, within Psyr_3952at 4699.644 kb on - strand, within Psyr_3952at 4699.738 kb on - strandat 4699.738 kb on - strandat 4699.738 kb on - strandat 4699.738 kb on - strandat 4699.738 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO
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4,697,702 + -1.6
4,697,702 + +0.5
4,697,702 + +0.1
4,697,702 + -0.3
4,697,702 + -1.7
4,697,702 + -1.5
4,697,702 + -0.3
4,697,702 + -0.4
4,697,702 + +0.2
4,697,702 + +0.3
4,697,702 + +0.4
4,697,703 - -0.2
4,697,703 - -0.6
4,697,703 - -0.2
4,697,703 - +0.1
4,697,703 - -0.9
4,697,703 - -0.3
4,697,793 - -0.2
4,697,793 - -2.7
4,698,792 - Psyr_3951 0.15 +0.1
4,699,452 - Psyr_3952 0.21 -0.3
4,699,514 - Psyr_3952 0.38 +1.3
4,699,554 - Psyr_3952 0.48 -0.9
4,699,635 - Psyr_3952 0.70 +1.4
4,699,635 - Psyr_3952 0.70 +1.2
4,699,644 - Psyr_3952 0.72 +1.1
4,699,738 - +1.2
4,699,738 - +0.3
4,699,738 - +1.4
4,699,738 - -0.0
4,699,738 - +0.9

Or see this region's nucleotide sequence