Experiment: DMSO
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2876 and Psyr_2877 are separated by 15 nucleotides Psyr_2877 and Psyr_2878 are separated by 244 nucleotides
Psyr_2876: Psyr_2876 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 3,450,322 to 3,451,893
_2876
Psyr_2877: Psyr_2877 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 3,451,909 to 3,452,913
_2877
Psyr_2878: Psyr_2878 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 3,453,158 to 3,454,786
_2878
Position (kb)
3451
3452
3453 Strain fitness (log2 ratio)
-2
-1
0
1 at 3451.127 kb on + strand, within Psyr_2876 at 3451.128 kb on - strand, within Psyr_2876 at 3451.265 kb on + strand, within Psyr_2876 at 3451.266 kb on - strand, within Psyr_2876 at 3451.277 kb on + strand, within Psyr_2876 at 3451.278 kb on - strand, within Psyr_2876 at 3451.278 kb on - strand, within Psyr_2876 at 3451.417 kb on + strand, within Psyr_2876 at 3451.417 kb on + strand, within Psyr_2876 at 3451.418 kb on - strand, within Psyr_2876 at 3451.481 kb on + strand, within Psyr_2876 at 3451.482 kb on - strand, within Psyr_2876 at 3451.677 kb on + strand, within Psyr_2876 at 3451.677 kb on + strand, within Psyr_2876 at 3451.836 kb on + strand at 3452.136 kb on - strand, within Psyr_2877 at 3452.237 kb on + strand, within Psyr_2877 at 3452.238 kb on - strand, within Psyr_2877 at 3452.268 kb on - strand, within Psyr_2877 at 3452.391 kb on - strand, within Psyr_2877 at 3452.485 kb on - strand, within Psyr_2877 at 3452.485 kb on - strand, within Psyr_2877 at 3452.502 kb on - strand, within Psyr_2877 at 3452.502 kb on - strand, within Psyr_2877 at 3452.502 kb on - strand, within Psyr_2877 at 3452.742 kb on - strand, within Psyr_2877 at 3452.813 kb on + strand at 3453.466 kb on + strand, within Psyr_2878 at 3453.893 kb on + strand, within Psyr_2878 at 3453.893 kb on + strand, within Psyr_2878
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO remove 3,451,127 + Psyr_2876 0.51 +0.7 3,451,128 - Psyr_2876 0.51 +0.5 3,451,265 + Psyr_2876 0.60 -0.7 3,451,266 - Psyr_2876 0.60 +0.2 3,451,277 + Psyr_2876 0.61 -0.6 3,451,278 - Psyr_2876 0.61 +1.3 3,451,278 - Psyr_2876 0.61 -0.8 3,451,417 + Psyr_2876 0.70 +0.0 3,451,417 + Psyr_2876 0.70 +0.1 3,451,418 - Psyr_2876 0.70 -0.9 3,451,481 + Psyr_2876 0.74 +0.2 3,451,482 - Psyr_2876 0.74 -0.7 3,451,677 + Psyr_2876 0.86 +0.0 3,451,677 + Psyr_2876 0.86 +0.5 3,451,836 + +0.8 3,452,136 - Psyr_2877 0.23 -0.1 3,452,237 + Psyr_2877 0.33 -1.7 3,452,238 - Psyr_2877 0.33 -2.3 3,452,268 - Psyr_2877 0.36 -1.4 3,452,391 - Psyr_2877 0.48 -0.4 3,452,485 - Psyr_2877 0.57 +0.4 3,452,485 - Psyr_2877 0.57 +0.3 3,452,502 - Psyr_2877 0.59 -0.3 3,452,502 - Psyr_2877 0.59 -0.1 3,452,502 - Psyr_2877 0.59 -0.8 3,452,742 - Psyr_2877 0.83 -1.1 3,452,813 + +0.5 3,453,466 + Psyr_2878 0.19 -0.2 3,453,893 + Psyr_2878 0.45 -0.2 3,453,893 + Psyr_2878 0.45 -0.7
Or see this region's nucleotide sequence