Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0693

Experiment: DMSO

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0691 and Psyr_0692 are separated by 67 nucleotidesPsyr_0692 and Psyr_0693 overlap by 4 nucleotidesPsyr_0693 and Psyr_0694 overlap by 7 nucleotidesPsyr_0694 and Psyr_0695 overlap by 4 nucleotides Psyr_0691: Psyr_0691 - gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03, at 795,237 to 796,964 _0691 Psyr_0692: Psyr_0692 - Binding-protein-dependent transport systems inner membrane component, at 797,032 to 797,799 _0692 Psyr_0693: Psyr_0693 - Binding-protein-dependent transport systems inner membrane component, at 797,796 to 798,623 _0693 Psyr_0694: Psyr_0694 - ABC transporter, at 798,617 to 799,414 _0694 Psyr_0695: Psyr_0695 - extracellular solute-binding protein, family 3, at 799,411 to 800,262 _0695 Position (kb) 797 798 799Strain fitness (log2 ratio) -2 -1 0 1 2at 796.915 kb on - strandat 796.915 kb on - strandat 797.037 kb on + strandat 797.038 kb on - strandat 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.235 kb on + strand, within Psyr_0692at 797.235 kb on + strand, within Psyr_0692at 797.235 kb on + strand, within Psyr_0692at 797.236 kb on - strand, within Psyr_0692at 797.236 kb on - strand, within Psyr_0692at 797.236 kb on - strand, within Psyr_0692at 797.238 kb on - strand, within Psyr_0692at 797.238 kb on - strand, within Psyr_0692at 797.238 kb on - strand, within Psyr_0692at 797.277 kb on - strand, within Psyr_0692at 797.277 kb on - strand, within Psyr_0692at 797.733 kb on - strandat 797.733 kb on - strandat 797.733 kb on - strandat 797.733 kb on - strandat 797.733 kb on - strandat 797.995 kb on + strand, within Psyr_0693at 797.995 kb on + strand, within Psyr_0693at 797.995 kb on + strand, within Psyr_0693at 797.995 kb on + strand, within Psyr_0693at 797.996 kb on - strand, within Psyr_0693at 797.996 kb on - strand, within Psyr_0693at 797.996 kb on - strand, within Psyr_0693at 798.118 kb on + strand, within Psyr_0693at 798.119 kb on - strand, within Psyr_0693at 798.119 kb on - strand, within Psyr_0693at 798.119 kb on - strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.375 kb on + strand, within Psyr_0693at 798.376 kb on - strand, within Psyr_0693at 798.510 kb on + strand, within Psyr_0693at 798.687 kb on + strandat 798.687 kb on + strandat 798.687 kb on + strandat 798.688 kb on - strandat 798.688 kb on - strandat 798.688 kb on - strandat 798.930 kb on + strand, within Psyr_0694at 798.930 kb on + strand, within Psyr_0694at 798.930 kb on + strand, within Psyr_0694at 798.931 kb on - strand, within Psyr_0694at 798.931 kb on - strand, within Psyr_0694at 798.931 kb on - strand, within Psyr_0694at 798.931 kb on - strand, within Psyr_0694at 799.457 kb on + strandat 799.457 kb on + strandat 799.457 kb on + strandat 799.457 kb on + strandat 799.457 kb on + strandat 799.457 kb on + strandat 799.457 kb on + strandat 799.458 kb on - strandat 799.458 kb on - strandat 799.458 kb on - strandat 799.595 kb on - strand, within Psyr_0695at 799.616 kb on + strand, within Psyr_0695at 799.617 kb on - strand, within Psyr_0695

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO
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796,915 - -0.3
796,915 - +0.5
797,037 + -0.2
797,038 - +0.0
797,153 + Psyr_0692 0.16 -0.6
797,153 + Psyr_0692 0.16 +0.4
797,153 + Psyr_0692 0.16 +0.4
797,153 + Psyr_0692 0.16 -0.1
797,153 + Psyr_0692 0.16 +2.1
797,153 + Psyr_0692 0.16 +0.5
797,153 + Psyr_0692 0.16 -0.9
797,153 + Psyr_0692 0.16 -0.2
797,153 + Psyr_0692 0.16 +0.1
797,153 + Psyr_0692 0.16 -1.4
797,153 + Psyr_0692 0.16 -0.5
797,153 + Psyr_0692 0.16 +0.8
797,154 - Psyr_0692 0.16 -1.5
797,154 - Psyr_0692 0.16 -1.1
797,154 - Psyr_0692 0.16 -1.1
797,154 - Psyr_0692 0.16 -0.5
797,154 - Psyr_0692 0.16 -0.6
797,154 - Psyr_0692 0.16 -0.9
797,154 - Psyr_0692 0.16 -0.9
797,154 - Psyr_0692 0.16 -0.2
797,154 - Psyr_0692 0.16 -2.3
797,154 - Psyr_0692 0.16 -0.0
797,154 - Psyr_0692 0.16 -0.3
797,235 + Psyr_0692 0.26 +0.7
797,235 + Psyr_0692 0.26 -0.5
797,235 + Psyr_0692 0.26 +1.0
797,236 - Psyr_0692 0.27 +0.7
797,236 - Psyr_0692 0.27 -1.0
797,236 - Psyr_0692 0.27 -0.9
797,238 - Psyr_0692 0.27 -0.4
797,238 - Psyr_0692 0.27 -0.9
797,238 - Psyr_0692 0.27 +0.0
797,277 - Psyr_0692 0.32 -1.0
797,277 - Psyr_0692 0.32 -0.6
797,733 - +0.6
797,733 - +0.6
797,733 - -2.0
797,733 - -0.6
797,733 - -0.0
797,995 + Psyr_0693 0.24 -0.2
797,995 + Psyr_0693 0.24 -0.2
797,995 + Psyr_0693 0.24 -0.2
797,995 + Psyr_0693 0.24 -1.1
797,996 - Psyr_0693 0.24 +0.4
797,996 - Psyr_0693 0.24 -0.1
797,996 - Psyr_0693 0.24 +1.3
798,118 + Psyr_0693 0.39 +0.2
798,119 - Psyr_0693 0.39 +1.5
798,119 - Psyr_0693 0.39 -0.2
798,119 - Psyr_0693 0.39 -0.6
798,142 + Psyr_0693 0.42 +1.6
798,142 + Psyr_0693 0.42 +0.1
798,142 + Psyr_0693 0.42 -0.5
798,142 + Psyr_0693 0.42 +0.3
798,142 + Psyr_0693 0.42 -0.6
798,142 + Psyr_0693 0.42 +0.2
798,142 + Psyr_0693 0.42 +0.6
798,142 + Psyr_0693 0.42 +1.1
798,142 + Psyr_0693 0.42 -0.8
798,143 - Psyr_0693 0.42 -0.1
798,143 - Psyr_0693 0.42 +1.1
798,143 - Psyr_0693 0.42 +0.1
798,143 - Psyr_0693 0.42 -0.7
798,143 - Psyr_0693 0.42 +0.0
798,143 - Psyr_0693 0.42 -0.1
798,143 - Psyr_0693 0.42 +2.0
798,375 + Psyr_0693 0.70 -0.4
798,376 - Psyr_0693 0.70 -0.7
798,510 + Psyr_0693 0.86 -0.1
798,687 + -0.1
798,687 + -2.1
798,687 + -1.8
798,688 - -0.3
798,688 - +0.2
798,688 - -0.1
798,930 + Psyr_0694 0.39 -1.3
798,930 + Psyr_0694 0.39 +0.6
798,930 + Psyr_0694 0.39 +0.1
798,931 - Psyr_0694 0.39 -1.4
798,931 - Psyr_0694 0.39 +0.5
798,931 - Psyr_0694 0.39 +0.5
798,931 - Psyr_0694 0.39 +1.1
799,457 + -0.4
799,457 + +0.4
799,457 + -1.1
799,457 + +1.1
799,457 + -0.3
799,457 + -0.6
799,457 + -0.8
799,458 - +1.5
799,458 - -0.6
799,458 - -1.4
799,595 - Psyr_0695 0.22 -1.4
799,616 + Psyr_0695 0.24 -1.7
799,617 - Psyr_0695 0.24 -0.3

Or see this region's nucleotide sequence