Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0519

Experiment: DMSO

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0518 and Psyr_0519 are separated by 384 nucleotidesPsyr_0519 and Psyr_0520 are separated by 129 nucleotides Psyr_0518: Psyr_0518 - 2-oxo-acid dehydrogenase E1 component homodimeric type, at 576,281 to 578,926 _0518 Psyr_0519: Psyr_0519 - Glutamate-ammonia-ligase adenylyltransferase, at 579,311 to 582,268 _0519 Psyr_0520: Psyr_0520 - Glycosyl transferase, family 9, at 582,398 to 583,432 _0520 Position (kb) 579 580 581 582 583Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 579.001 kb on - strandat 579.001 kb on - strandat 579.137 kb on - strandat 579.142 kb on - strandat 579.142 kb on - strandat 579.318 kb on + strandat 579.319 kb on - strandat 579.556 kb on + strandat 579.556 kb on + strandat 579.557 kb on - strandat 579.557 kb on - strandat 579.639 kb on + strand, within Psyr_0519at 579.640 kb on - strand, within Psyr_0519at 579.640 kb on - strand, within Psyr_0519at 579.762 kb on - strand, within Psyr_0519at 579.762 kb on - strand, within Psyr_0519at 579.773 kb on + strand, within Psyr_0519at 579.773 kb on + strand, within Psyr_0519at 579.773 kb on + strand, within Psyr_0519at 579.773 kb on + strand, within Psyr_0519at 579.774 kb on - strand, within Psyr_0519at 580.106 kb on + strand, within Psyr_0519at 580.106 kb on + strand, within Psyr_0519at 580.107 kb on - strand, within Psyr_0519at 580.109 kb on + strand, within Psyr_0519at 580.109 kb on + strand, within Psyr_0519at 580.109 kb on + strand, within Psyr_0519at 580.452 kb on - strand, within Psyr_0519at 580.506 kb on - strand, within Psyr_0519at 580.506 kb on - strand, within Psyr_0519at 580.637 kb on + strand, within Psyr_0519at 580.637 kb on + strand, within Psyr_0519at 580.637 kb on + strand, within Psyr_0519at 580.637 kb on + strand, within Psyr_0519at 580.637 kb on + strand, within Psyr_0519at 580.638 kb on - strand, within Psyr_0519at 580.638 kb on - strand, within Psyr_0519at 580.638 kb on - strand, within Psyr_0519at 580.638 kb on - strand, within Psyr_0519at 580.638 kb on - strand, within Psyr_0519at 580.638 kb on - strand, within Psyr_0519at 580.638 kb on - strand, within Psyr_0519at 580.638 kb on - strand, within Psyr_0519at 580.987 kb on - strand, within Psyr_0519at 580.987 kb on - strand, within Psyr_0519at 581.012 kb on + strand, within Psyr_0519at 581.012 kb on + strand, within Psyr_0519at 581.019 kb on + strand, within Psyr_0519at 581.020 kb on - strand, within Psyr_0519at 581.203 kb on + strand, within Psyr_0519at 581.324 kb on + strand, within Psyr_0519at 581.325 kb on - strand, within Psyr_0519at 581.456 kb on + strand, within Psyr_0519at 581.639 kb on + strand, within Psyr_0519at 581.639 kb on + strand, within Psyr_0519at 581.640 kb on - strand, within Psyr_0519at 582.011 kb on + strandat 582.056 kb on + strandat 582.056 kb on + strandat 582.140 kb on + strandat 582.140 kb on + strandat 582.140 kb on + strandat 582.140 kb on + strandat 582.140 kb on + strandat 582.140 kb on + strandat 582.140 kb on + strandat 582.140 kb on + strandat 582.140 kb on + strandat 582.142 kb on + strandat 582.142 kb on + strandat 582.304 kb on + strandat 582.304 kb on + strandat 582.304 kb on + strandat 582.304 kb on + strandat 582.304 kb on + strandat 582.304 kb on + strandat 582.304 kb on + strandat 582.304 kb on + strandat 582.304 kb on + strandat 582.306 kb on + strandat 582.312 kb on + strandat 582.312 kb on + strandat 582.312 kb on + strandat 582.312 kb on + strandat 582.312 kb on + strandat 582.312 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO
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579,001 - +0.8
579,001 - -0.2
579,137 - -0.9
579,142 - +0.6
579,142 - -2.0
579,318 + +0.8
579,319 - -0.4
579,556 + -0.2
579,556 + -0.1
579,557 - -1.8
579,557 - -1.6
579,639 + Psyr_0519 0.11 -0.3
579,640 - Psyr_0519 0.11 +0.1
579,640 - Psyr_0519 0.11 -0.1
579,762 - Psyr_0519 0.15 +0.8
579,762 - Psyr_0519 0.15 +0.8
579,773 + Psyr_0519 0.16 -1.0
579,773 + Psyr_0519 0.16 -0.9
579,773 + Psyr_0519 0.16 +0.9
579,773 + Psyr_0519 0.16 -0.2
579,774 - Psyr_0519 0.16 +1.2
580,106 + Psyr_0519 0.27 -0.4
580,106 + Psyr_0519 0.27 -1.2
580,107 - Psyr_0519 0.27 -2.6
580,109 + Psyr_0519 0.27 -1.9
580,109 + Psyr_0519 0.27 -0.3
580,109 + Psyr_0519 0.27 -0.9
580,452 - Psyr_0519 0.39 -1.8
580,506 - Psyr_0519 0.40 -0.3
580,506 - Psyr_0519 0.40 +0.7
580,637 + Psyr_0519 0.45 -0.5
580,637 + Psyr_0519 0.45 -0.3
580,637 + Psyr_0519 0.45 -0.8
580,637 + Psyr_0519 0.45 -1.7
580,637 + Psyr_0519 0.45 -1.2
580,638 - Psyr_0519 0.45 +0.1
580,638 - Psyr_0519 0.45 -0.0
580,638 - Psyr_0519 0.45 -0.9
580,638 - Psyr_0519 0.45 +0.0
580,638 - Psyr_0519 0.45 +0.6
580,638 - Psyr_0519 0.45 -0.6
580,638 - Psyr_0519 0.45 -1.2
580,638 - Psyr_0519 0.45 -0.4
580,987 - Psyr_0519 0.57 +0.6
580,987 - Psyr_0519 0.57 -1.2
581,012 + Psyr_0519 0.58 -0.8
581,012 + Psyr_0519 0.58 -0.9
581,019 + Psyr_0519 0.58 -0.1
581,020 - Psyr_0519 0.58 -2.3
581,203 + Psyr_0519 0.64 -0.8
581,324 + Psyr_0519 0.68 -0.4
581,325 - Psyr_0519 0.68 +0.1
581,456 + Psyr_0519 0.73 -1.8
581,639 + Psyr_0519 0.79 -0.2
581,639 + Psyr_0519 0.79 +1.0
581,640 - Psyr_0519 0.79 +2.4
582,011 + -0.4
582,056 + -0.6
582,056 + -1.6
582,140 + -3.5
582,140 + -1.3
582,140 + -0.9
582,140 + +0.4
582,140 + -1.4
582,140 + -0.0
582,140 + -0.6
582,140 + +0.7
582,140 + +0.2
582,142 + +0.4
582,142 + -2.5
582,304 + -0.8
582,304 + +1.2
582,304 + -0.4
582,304 + +3.0
582,304 + -0.2
582,304 + -0.8
582,304 + -2.0
582,304 + +0.3
582,304 + -0.3
582,306 + +0.1
582,312 + -0.6
582,312 + +1.4
582,312 + -0.2
582,312 + +0.6
582,312 + -0.5
582,312 + +0.4

Or see this region's nucleotide sequence