Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4836

Experiment: DMSO

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4835 and Psyr_4836 are separated by 11 nucleotidesPsyr_4836 and Psyr_4837 are separated by 151 nucleotides Psyr_4835: Psyr_4835 - imidazolonepropionase, at 5,739,201 to 5,740,406 _4835 Psyr_4836: Psyr_4836 - N-formylglutamate deformylase, at 5,740,418 to 5,741,218 _4836 Psyr_4837: Psyr_4837 - Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase, at 5,741,370 to 5,743,628 _4837 Position (kb) 5740 5741 5742Strain fitness (log2 ratio) -2 -1 0 1 2at 5739.462 kb on + strand, within Psyr_4835at 5739.492 kb on - strand, within Psyr_4835at 5739.540 kb on + strand, within Psyr_4835at 5739.540 kb on + strand, within Psyr_4835at 5739.729 kb on + strand, within Psyr_4835at 5739.750 kb on + strand, within Psyr_4835at 5739.750 kb on + strand, within Psyr_4835at 5739.750 kb on + strand, within Psyr_4835at 5739.750 kb on + strand, within Psyr_4835at 5739.751 kb on - strand, within Psyr_4835at 5739.751 kb on - strand, within Psyr_4835at 5739.751 kb on - strand, within Psyr_4835at 5739.751 kb on - strand, within Psyr_4835at 5739.751 kb on - strand, within Psyr_4835at 5739.831 kb on + strand, within Psyr_4835at 5739.832 kb on - strand, within Psyr_4835at 5739.955 kb on - strand, within Psyr_4835at 5740.345 kb on - strandat 5740.345 kb on - strandat 5740.569 kb on - strand, within Psyr_4836at 5740.664 kb on + strand, within Psyr_4836at 5740.664 kb on + strand, within Psyr_4836at 5740.664 kb on + strand, within Psyr_4836at 5740.664 kb on + strand, within Psyr_4836at 5740.664 kb on + strand, within Psyr_4836at 5740.665 kb on - strand, within Psyr_4836at 5740.665 kb on - strand, within Psyr_4836at 5740.665 kb on - strand, within Psyr_4836at 5740.665 kb on - strand, within Psyr_4836at 5740.665 kb on - strand, within Psyr_4836at 5740.665 kb on - strand, within Psyr_4836at 5740.665 kb on - strand, within Psyr_4836at 5740.665 kb on - strand, within Psyr_4836at 5740.665 kb on - strand, within Psyr_4836at 5740.665 kb on - strand, within Psyr_4836at 5740.665 kb on - strand, within Psyr_4836at 5740.713 kb on + strand, within Psyr_4836at 5740.714 kb on - strand, within Psyr_4836at 5740.763 kb on + strand, within Psyr_4836at 5740.788 kb on - strand, within Psyr_4836at 5740.994 kb on + strand, within Psyr_4836at 5740.995 kb on - strand, within Psyr_4836at 5740.995 kb on - strand, within Psyr_4836at 5740.995 kb on - strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.102 kb on + strand, within Psyr_4836at 5741.103 kb on - strand, within Psyr_4836at 5741.103 kb on - strand, within Psyr_4836at 5741.103 kb on - strand, within Psyr_4836at 5741.103 kb on - strand, within Psyr_4836at 5741.103 kb on - strand, within Psyr_4836at 5741.152 kb on + strandat 5741.298 kb on + strandat 5741.299 kb on - strandat 5741.552 kb on + strandat 5741.719 kb on + strand, within Psyr_4837at 5741.719 kb on + strand, within Psyr_4837at 5741.719 kb on + strand, within Psyr_4837at 5741.719 kb on + strand, within Psyr_4837at 5741.719 kb on + strand, within Psyr_4837at 5741.719 kb on + strand, within Psyr_4837at 5741.719 kb on + strand, within Psyr_4837at 5741.720 kb on - strand, within Psyr_4837at 5741.720 kb on - strand, within Psyr_4837at 5741.720 kb on - strand, within Psyr_4837at 5741.720 kb on - strand, within Psyr_4837at 5741.721 kb on + strand, within Psyr_4837at 5742.046 kb on + strand, within Psyr_4837at 5742.046 kb on + strand, within Psyr_4837at 5742.046 kb on + strand, within Psyr_4837at 5742.046 kb on + strand, within Psyr_4837at 5742.046 kb on + strand, within Psyr_4837at 5742.046 kb on + strand, within Psyr_4837at 5742.046 kb on + strand, within Psyr_4837at 5742.046 kb on + strand, within Psyr_4837at 5742.047 kb on - strand, within Psyr_4837at 5742.047 kb on - strand, within Psyr_4837at 5742.047 kb on - strand, within Psyr_4837at 5742.047 kb on - strand, within Psyr_4837at 5742.047 kb on - strand, within Psyr_4837at 5742.047 kb on - strand, within Psyr_4837at 5742.047 kb on - strand, within Psyr_4837at 5742.047 kb on - strand, within Psyr_4837at 5742.047 kb on - strand, within Psyr_4837at 5742.047 kb on - strand, within Psyr_4837

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO
remove
5,739,462 + Psyr_4835 0.22 -0.4
5,739,492 - Psyr_4835 0.24 +0.2
5,739,540 + Psyr_4835 0.28 +0.8
5,739,540 + Psyr_4835 0.28 +0.8
5,739,729 + Psyr_4835 0.44 +0.0
5,739,750 + Psyr_4835 0.46 +2.2
5,739,750 + Psyr_4835 0.46 -0.2
5,739,750 + Psyr_4835 0.46 +0.7
5,739,750 + Psyr_4835 0.46 -0.2
5,739,751 - Psyr_4835 0.46 +1.3
5,739,751 - Psyr_4835 0.46 -0.1
5,739,751 - Psyr_4835 0.46 +1.0
5,739,751 - Psyr_4835 0.46 -0.7
5,739,751 - Psyr_4835 0.46 +1.2
5,739,831 + Psyr_4835 0.52 +0.8
5,739,832 - Psyr_4835 0.52 +1.6
5,739,955 - Psyr_4835 0.63 -2.6
5,740,345 - -0.1
5,740,345 - -0.5
5,740,569 - Psyr_4836 0.19 +1.2
5,740,664 + Psyr_4836 0.31 -0.7
5,740,664 + Psyr_4836 0.31 +1.0
5,740,664 + Psyr_4836 0.31 +0.3
5,740,664 + Psyr_4836 0.31 +0.5
5,740,664 + Psyr_4836 0.31 -0.8
5,740,665 - Psyr_4836 0.31 +0.9
5,740,665 - Psyr_4836 0.31 -0.3
5,740,665 - Psyr_4836 0.31 +0.8
5,740,665 - Psyr_4836 0.31 +0.5
5,740,665 - Psyr_4836 0.31 -0.3
5,740,665 - Psyr_4836 0.31 +1.0
5,740,665 - Psyr_4836 0.31 +2.5
5,740,665 - Psyr_4836 0.31 -0.8
5,740,665 - Psyr_4836 0.31 -1.8
5,740,665 - Psyr_4836 0.31 +0.6
5,740,665 - Psyr_4836 0.31 -0.2
5,740,713 + Psyr_4836 0.37 +0.8
5,740,714 - Psyr_4836 0.37 +0.5
5,740,763 + Psyr_4836 0.43 +0.7
5,740,788 - Psyr_4836 0.46 +1.2
5,740,994 + Psyr_4836 0.72 +0.9
5,740,995 - Psyr_4836 0.72 +0.3
5,740,995 - Psyr_4836 0.72 +0.3
5,740,995 - Psyr_4836 0.72 +1.2
5,741,102 + Psyr_4836 0.85 +0.2
5,741,102 + Psyr_4836 0.85 -0.1
5,741,102 + Psyr_4836 0.85 +0.8
5,741,102 + Psyr_4836 0.85 -0.0
5,741,102 + Psyr_4836 0.85 +1.2
5,741,102 + Psyr_4836 0.85 +0.7
5,741,102 + Psyr_4836 0.85 +0.8
5,741,102 + Psyr_4836 0.85 -0.1
5,741,102 + Psyr_4836 0.85 +1.4
5,741,102 + Psyr_4836 0.85 -0.4
5,741,102 + Psyr_4836 0.85 +1.6
5,741,102 + Psyr_4836 0.85 +0.2
5,741,103 - Psyr_4836 0.86 +0.7
5,741,103 - Psyr_4836 0.86 +0.2
5,741,103 - Psyr_4836 0.86 +1.3
5,741,103 - Psyr_4836 0.86 -0.0
5,741,103 - Psyr_4836 0.86 +1.3
5,741,152 + +0.2
5,741,298 + +0.4
5,741,299 - -0.1
5,741,552 + +0.0
5,741,719 + Psyr_4837 0.15 +0.3
5,741,719 + Psyr_4837 0.15 -2.3
5,741,719 + Psyr_4837 0.15 +0.3
5,741,719 + Psyr_4837 0.15 -1.1
5,741,719 + Psyr_4837 0.15 -1.4
5,741,719 + Psyr_4837 0.15 -0.2
5,741,719 + Psyr_4837 0.15 -0.4
5,741,720 - Psyr_4837 0.15 -2.4
5,741,720 - Psyr_4837 0.15 +1.5
5,741,720 - Psyr_4837 0.15 +1.4
5,741,720 - Psyr_4837 0.15 +1.2
5,741,721 + Psyr_4837 0.16 -0.7
5,742,046 + Psyr_4837 0.30 -0.1
5,742,046 + Psyr_4837 0.30 -0.0
5,742,046 + Psyr_4837 0.30 -0.7
5,742,046 + Psyr_4837 0.30 -0.6
5,742,046 + Psyr_4837 0.30 -1.2
5,742,046 + Psyr_4837 0.30 -0.3
5,742,046 + Psyr_4837 0.30 -1.2
5,742,046 + Psyr_4837 0.30 -0.3
5,742,047 - Psyr_4837 0.30 -1.1
5,742,047 - Psyr_4837 0.30 +0.7
5,742,047 - Psyr_4837 0.30 +0.2
5,742,047 - Psyr_4837 0.30 -0.5
5,742,047 - Psyr_4837 0.30 +0.7
5,742,047 - Psyr_4837 0.30 -1.9
5,742,047 - Psyr_4837 0.30 -0.4
5,742,047 - Psyr_4837 0.30 -0.5
5,742,047 - Psyr_4837 0.30 -1.3
5,742,047 - Psyr_4837 0.30 +0.7

Or see this region's nucleotide sequence