Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3682

Experiment: DMSO

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3681 and Psyr_3682 are separated by 424 nucleotidesPsyr_3682 and Psyr_3683 are separated by 328 nucleotidesPsyr_3683 and Psyr_3684 are separated by 89 nucleotides Psyr_3681: Psyr_3681 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 4,367,306 to 4,367,917 _3681 Psyr_3682: Psyr_3682 - L-sorbosone dehydrogenase, at 4,368,342 to 4,369,670 _3682 Psyr_3683: Psyr_3683 - NLP/P60, at 4,369,999 to 4,370,544 _3683 Psyr_3684: Psyr_3684 - NLP/P60, at 4,370,634 to 4,371,362 _3684 Position (kb) 4368 4369 4370Strain fitness (log2 ratio) -3 -2 -1 0 1at 4367.429 kb on + strand, within Psyr_3681at 4367.429 kb on + strand, within Psyr_3681at 4367.430 kb on - strand, within Psyr_3681at 4367.430 kb on - strand, within Psyr_3681at 4367.430 kb on - strand, within Psyr_3681at 4368.116 kb on + strandat 4368.116 kb on + strandat 4368.117 kb on - strandat 4368.281 kb on + strandat 4368.302 kb on - strandat 4368.309 kb on - strandat 4368.309 kb on - strandat 4368.364 kb on - strandat 4368.509 kb on - strand, within Psyr_3682at 4368.597 kb on + strand, within Psyr_3682at 4368.597 kb on + strand, within Psyr_3682at 4368.597 kb on + strand, within Psyr_3682at 4368.597 kb on + strand, within Psyr_3682at 4368.597 kb on + strand, within Psyr_3682at 4368.597 kb on + strand, within Psyr_3682at 4368.597 kb on + strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.999 kb on + strand, within Psyr_3682at 4368.999 kb on + strand, within Psyr_3682at 4369.000 kb on - strand, within Psyr_3682at 4369.000 kb on - strand, within Psyr_3682at 4369.000 kb on - strand, within Psyr_3682at 4369.000 kb on - strand, within Psyr_3682at 4369.218 kb on + strand, within Psyr_3682at 4369.218 kb on + strand, within Psyr_3682at 4369.219 kb on - strand, within Psyr_3682at 4369.248 kb on + strand, within Psyr_3682at 4369.248 kb on + strand, within Psyr_3682at 4369.249 kb on - strand, within Psyr_3682at 4369.260 kb on + strand, within Psyr_3682at 4369.260 kb on + strand, within Psyr_3682at 4369.261 kb on - strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.267 kb on - strand, within Psyr_3682at 4369.267 kb on - strand, within Psyr_3682at 4369.267 kb on - strand, within Psyr_3682at 4369.270 kb on - strand, within Psyr_3682at 4369.470 kb on + strand, within Psyr_3682at 4369.708 kb on + strandat 4369.709 kb on - strandat 4369.709 kb on - strandat 4369.709 kb on - strandat 4369.863 kb on + strandat 4369.864 kb on - strandat 4369.893 kb on + strandat 4369.918 kb on + strandat 4369.919 kb on - strandat 4369.919 kb on - strandat 4369.919 kb on - strandat 4370.054 kb on + strand, within Psyr_3683at 4370.055 kb on - strand, within Psyr_3683at 4370.055 kb on - strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.226 kb on + strand, within Psyr_3683at 4370.300 kb on + strand, within Psyr_3683at 4370.300 kb on + strand, within Psyr_3683at 4370.300 kb on + strand, within Psyr_3683at 4370.301 kb on - strand, within Psyr_3683at 4370.305 kb on + strand, within Psyr_3683at 4370.305 kb on + strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.307 kb on + strand, within Psyr_3683at 4370.544 kb on + strandat 4370.558 kb on + strandat 4370.573 kb on + strandat 4370.574 kb on - strandat 4370.574 kb on - strandat 4370.631 kb on + strandat 4370.632 kb on - strandat 4370.635 kb on + strandat 4370.635 kb on + strandat 4370.635 kb on + strandat 4370.636 kb on - strandat 4370.667 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO
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4,367,429 + Psyr_3681 0.20 -0.8
4,367,429 + Psyr_3681 0.20 -0.4
4,367,430 - Psyr_3681 0.20 -0.4
4,367,430 - Psyr_3681 0.20 -1.8
4,367,430 - Psyr_3681 0.20 +0.2
4,368,116 + +0.6
4,368,116 + -0.0
4,368,117 - +0.0
4,368,281 + +0.6
4,368,302 - +0.2
4,368,309 - +1.3
4,368,309 - -0.3
4,368,364 - -0.5
4,368,509 - Psyr_3682 0.13 -0.1
4,368,597 + Psyr_3682 0.19 -0.4
4,368,597 + Psyr_3682 0.19 -0.7
4,368,597 + Psyr_3682 0.19 -0.2
4,368,597 + Psyr_3682 0.19 -0.3
4,368,597 + Psyr_3682 0.19 -0.8
4,368,597 + Psyr_3682 0.19 +0.8
4,368,597 + Psyr_3682 0.19 -0.6
4,368,598 - Psyr_3682 0.19 +0.3
4,368,598 - Psyr_3682 0.19 -1.8
4,368,598 - Psyr_3682 0.19 +1.6
4,368,598 - Psyr_3682 0.19 -0.0
4,368,598 - Psyr_3682 0.19 -2.3
4,368,598 - Psyr_3682 0.19 -0.1
4,368,598 - Psyr_3682 0.19 +0.2
4,368,598 - Psyr_3682 0.19 -0.2
4,368,598 - Psyr_3682 0.19 -0.7
4,368,598 - Psyr_3682 0.19 +0.6
4,368,843 + Psyr_3682 0.38 -0.2
4,368,843 + Psyr_3682 0.38 -0.0
4,368,843 + Psyr_3682 0.38 -1.1
4,368,843 + Psyr_3682 0.38 -0.6
4,368,843 + Psyr_3682 0.38 +0.7
4,368,843 + Psyr_3682 0.38 -0.3
4,368,843 + Psyr_3682 0.38 +0.8
4,368,844 - Psyr_3682 0.38 -0.6
4,368,844 - Psyr_3682 0.38 +0.1
4,368,844 - Psyr_3682 0.38 -0.1
4,368,844 - Psyr_3682 0.38 -0.2
4,368,844 - Psyr_3682 0.38 +0.4
4,368,844 - Psyr_3682 0.38 +0.8
4,368,844 - Psyr_3682 0.38 +1.0
4,368,999 + Psyr_3682 0.49 -0.9
4,368,999 + Psyr_3682 0.49 +0.7
4,369,000 - Psyr_3682 0.50 -0.5
4,369,000 - Psyr_3682 0.50 -0.8
4,369,000 - Psyr_3682 0.50 -1.0
4,369,000 - Psyr_3682 0.50 -0.5
4,369,218 + Psyr_3682 0.66 +0.5
4,369,218 + Psyr_3682 0.66 +1.2
4,369,219 - Psyr_3682 0.66 -0.2
4,369,248 + Psyr_3682 0.68 -0.8
4,369,248 + Psyr_3682 0.68 +1.6
4,369,249 - Psyr_3682 0.68 -0.4
4,369,260 + Psyr_3682 0.69 +0.6
4,369,260 + Psyr_3682 0.69 -0.4
4,369,261 - Psyr_3682 0.69 -3.4
4,369,266 + Psyr_3682 0.70 -0.0
4,369,266 + Psyr_3682 0.70 +0.3
4,369,266 + Psyr_3682 0.70 +1.3
4,369,266 + Psyr_3682 0.70 -3.1
4,369,266 + Psyr_3682 0.70 -0.9
4,369,267 - Psyr_3682 0.70 -0.1
4,369,267 - Psyr_3682 0.70 -0.3
4,369,267 - Psyr_3682 0.70 -0.7
4,369,270 - Psyr_3682 0.70 -0.5
4,369,470 + Psyr_3682 0.85 +0.7
4,369,708 + +0.3
4,369,709 - +0.8
4,369,709 - -0.8
4,369,709 - +1.2
4,369,863 + -0.1
4,369,864 - -1.1
4,369,893 + -0.2
4,369,918 + +0.2
4,369,919 - +0.3
4,369,919 - -0.0
4,369,919 - +0.9
4,370,054 + Psyr_3683 0.10 +0.4
4,370,055 - Psyr_3683 0.10 +0.5
4,370,055 - Psyr_3683 0.10 +0.2
4,370,144 + Psyr_3683 0.27 +0.5
4,370,144 + Psyr_3683 0.27 -0.1
4,370,144 + Psyr_3683 0.27 -0.7
4,370,144 + Psyr_3683 0.27 -0.6
4,370,144 + Psyr_3683 0.27 +0.0
4,370,144 + Psyr_3683 0.27 -0.0
4,370,144 + Psyr_3683 0.27 +0.6
4,370,144 + Psyr_3683 0.27 -1.2
4,370,144 + Psyr_3683 0.27 +0.8
4,370,144 + Psyr_3683 0.27 -0.1
4,370,144 + Psyr_3683 0.27 +0.2
4,370,144 + Psyr_3683 0.27 +0.6
4,370,144 + Psyr_3683 0.27 +0.5
4,370,144 + Psyr_3683 0.27 +0.2
4,370,145 - Psyr_3683 0.27 -1.1
4,370,145 - Psyr_3683 0.27 -0.4
4,370,145 - Psyr_3683 0.27 +0.7
4,370,145 - Psyr_3683 0.27 -0.1
4,370,145 - Psyr_3683 0.27 -0.7
4,370,145 - Psyr_3683 0.27 +0.7
4,370,145 - Psyr_3683 0.27 -0.4
4,370,145 - Psyr_3683 0.27 -0.9
4,370,145 - Psyr_3683 0.27 -1.1
4,370,226 + Psyr_3683 0.42 +0.1
4,370,300 + Psyr_3683 0.55 -0.7
4,370,300 + Psyr_3683 0.55 +0.3
4,370,300 + Psyr_3683 0.55 +0.5
4,370,301 - Psyr_3683 0.55 +0.3
4,370,305 + Psyr_3683 0.56 -0.4
4,370,305 + Psyr_3683 0.56 +0.2
4,370,306 - Psyr_3683 0.56 -0.4
4,370,306 - Psyr_3683 0.56 +0.9
4,370,307 + Psyr_3683 0.56 +0.7
4,370,544 + -0.4
4,370,558 + -0.6
4,370,573 + -0.1
4,370,574 - +0.5
4,370,574 - +1.1
4,370,631 + +0.9
4,370,632 - +0.7
4,370,635 + +1.3
4,370,635 + +1.7
4,370,635 + +0.9
4,370,636 - +0.3
4,370,667 - +0.3

Or see this region's nucleotide sequence