Experiment: DMSO
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3011 and Psyr_3012 are separated by 317 nucleotides Psyr_3012 and Psyr_3013 are separated by 157 nucleotides Psyr_3013 and Psyr_3014 are separated by 77 nucleotides
Psyr_3011: Psyr_3011 - Helix-turn-helix, Fis-type, at 3,604,772 to 3,606,097
_3011
Psyr_3012: Psyr_3012 - conserved hypothetical protein, at 3,606,415 to 3,606,681
_3012
Psyr_3013: Psyr_3013 - magnesium chelatase subunit ChlD, at 3,606,839 to 3,607,426
_3013
Psyr_3014: Psyr_3014 - protoporphyrin IX magnesium-chelatase, at 3,607,504 to 3,608,538
_3014
Position (kb)
3606
3607
3608 Strain fitness (log2 ratio)
-2
-1
0
1 at 3605.954 kb on + strand, within Psyr_3011 at 3605.954 kb on + strand, within Psyr_3011 at 3605.955 kb on - strand, within Psyr_3011 at 3605.955 kb on - strand, within Psyr_3011 at 3605.955 kb on - strand, within Psyr_3011 at 3605.955 kb on - strand, within Psyr_3011 at 3605.955 kb on - strand, within Psyr_3011 at 3605.955 kb on - strand, within Psyr_3011 at 3605.955 kb on - strand, within Psyr_3011 at 3605.955 kb on - strand, within Psyr_3011 at 3605.955 kb on - strand, within Psyr_3011 at 3605.955 kb on - strand, within Psyr_3011 at 3605.955 kb on - strand at 3606.066 kb on - strand at 3606.120 kb on + strand at 3606.205 kb on - strand at 3606.226 kb on + strand at 3606.240 kb on + strand at 3606.299 kb on + strand at 3606.352 kb on - strand at 3606.393 kb on - strand at 3606.584 kb on - strand, within Psyr_3012 at 3606.712 kb on + strand at 3607.313 kb on + strand, within Psyr_3013 at 3607.313 kb on + strand, within Psyr_3013 at 3607.313 kb on + strand, within Psyr_3013 at 3607.505 kb on + strand at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.211 kb on - strand, within Psyr_3014 at 3608.211 kb on - strand, within Psyr_3014 at 3608.211 kb on - strand, within Psyr_3014
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO remove 3,605,954 + Psyr_3011 0.89 -0.7 3,605,954 + Psyr_3011 0.89 -0.9 3,605,955 - Psyr_3011 0.89 +0.5 3,605,955 - Psyr_3011 0.89 +0.3 3,605,955 - Psyr_3011 0.89 -0.1 3,605,955 - Psyr_3011 0.89 +0.5 3,605,955 - Psyr_3011 0.89 -0.8 3,605,955 - Psyr_3011 0.89 -0.4 3,605,955 - Psyr_3011 0.89 +0.8 3,605,955 - Psyr_3011 0.89 +0.3 3,605,955 - Psyr_3011 0.89 -0.8 3,605,955 - Psyr_3011 0.89 -0.4 3,605,955 - +0.3 3,606,066 - +0.3 3,606,120 + +1.0 3,606,205 - -0.5 3,606,226 + -0.4 3,606,240 + -0.3 3,606,299 + -0.4 3,606,352 - -0.4 3,606,393 - -0.2 3,606,584 - Psyr_3012 0.63 -0.2 3,606,712 + -0.2 3,607,313 + Psyr_3013 0.81 -2.4 3,607,313 + Psyr_3013 0.81 -0.4 3,607,313 + Psyr_3013 0.81 -1.7 3,607,505 + +0.6 3,608,210 + Psyr_3014 0.68 -1.2 3,608,210 + Psyr_3014 0.68 -0.4 3,608,210 + Psyr_3014 0.68 +0.7 3,608,210 + Psyr_3014 0.68 -0.8 3,608,210 + Psyr_3014 0.68 +1.2 3,608,211 - Psyr_3014 0.68 -1.4 3,608,211 - Psyr_3014 0.68 +1.2 3,608,211 - Psyr_3014 0.68 +1.5
Or see this region's nucleotide sequence