Experiment: DMSO
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2866 and Psyr_2867 are separated by 144 nucleotides Psyr_2867 and Psyr_2868 overlap by 4 nucleotides Psyr_2868 and Psyr_2869 are separated by 131 nucleotides
Psyr_2866: Psyr_2866 - Secretion protein HlyD, at 3,440,050 to 3,441,252
_2866
Psyr_2867: Psyr_2867 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 3,441,397 to 3,442,788
_2867
Psyr_2868: Psyr_2868 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 3,442,785 to 3,443,468
_2868
Psyr_2869: Psyr_2869 - xenobiotic compound monooxygenase, DszA family, at 3,443,600 to 3,445,000
_2869
Position (kb)
3441
3442
3443 Strain fitness (log2 ratio)
-2
-1
0
1 at 3440.483 kb on + strand, within Psyr_2866 at 3440.483 kb on + strand, within Psyr_2866 at 3440.484 kb on - strand, within Psyr_2866 at 3440.609 kb on + strand, within Psyr_2866 at 3440.945 kb on + strand, within Psyr_2866 at 3440.945 kb on + strand, within Psyr_2866 at 3440.946 kb on - strand, within Psyr_2866 at 3440.967 kb on - strand, within Psyr_2866 at 3441.044 kb on - strand, within Psyr_2866 at 3441.200 kb on + strand at 3441.200 kb on + strand at 3441.200 kb on + strand at 3441.200 kb on + strand at 3441.200 kb on + strand at 3441.201 kb on - strand at 3441.201 kb on - strand at 3441.201 kb on - strand at 3441.227 kb on + strand at 3441.227 kb on + strand at 3441.228 kb on - strand at 3441.361 kb on - strand at 3441.571 kb on + strand, within Psyr_2867 at 3441.685 kb on - strand, within Psyr_2867 at 3441.877 kb on + strand, within Psyr_2867 at 3442.279 kb on + strand, within Psyr_2867 at 3442.279 kb on + strand, within Psyr_2867 at 3442.280 kb on - strand, within Psyr_2867 at 3442.280 kb on - strand, within Psyr_2867 at 3442.280 kb on - strand, within Psyr_2867 at 3442.860 kb on + strand, within Psyr_2868 at 3442.860 kb on + strand, within Psyr_2868 at 3443.094 kb on + strand, within Psyr_2868 at 3443.094 kb on + strand, within Psyr_2868 at 3443.094 kb on + strand, within Psyr_2868 at 3443.094 kb on + strand, within Psyr_2868 at 3443.095 kb on - strand, within Psyr_2868 at 3443.095 kb on - strand, within Psyr_2868 at 3443.095 kb on - strand, within Psyr_2868 at 3443.095 kb on - strand, within Psyr_2868 at 3443.095 kb on - strand, within Psyr_2868 at 3443.452 kb on - strand at 3443.496 kb on + strand at 3443.496 kb on + strand at 3443.501 kb on - strand at 3443.501 kb on - strand at 3443.564 kb on - strand at 3443.736 kb on + strand at 3443.737 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO remove 3,440,483 + Psyr_2866 0.36 +0.3 3,440,483 + Psyr_2866 0.36 -1.2 3,440,484 - Psyr_2866 0.36 +0.7 3,440,609 + Psyr_2866 0.46 +0.3 3,440,945 + Psyr_2866 0.74 +0.8 3,440,945 + Psyr_2866 0.74 -0.9 3,440,946 - Psyr_2866 0.74 -0.1 3,440,967 - Psyr_2866 0.76 -1.6 3,441,044 - Psyr_2866 0.83 -0.2 3,441,200 + -0.7 3,441,200 + +0.2 3,441,200 + +0.0 3,441,200 + +0.2 3,441,200 + -0.2 3,441,201 - +0.4 3,441,201 - -0.1 3,441,201 - -0.2 3,441,227 + +1.1 3,441,227 + +0.7 3,441,228 - +0.9 3,441,361 - -0.3 3,441,571 + Psyr_2867 0.12 -0.6 3,441,685 - Psyr_2867 0.21 -0.3 3,441,877 + Psyr_2867 0.34 -1.1 3,442,279 + Psyr_2867 0.63 -1.1 3,442,279 + Psyr_2867 0.63 -0.6 3,442,280 - Psyr_2867 0.63 -1.2 3,442,280 - Psyr_2867 0.63 -0.0 3,442,280 - Psyr_2867 0.63 -0.4 3,442,860 + Psyr_2868 0.11 -0.5 3,442,860 + Psyr_2868 0.11 +0.4 3,443,094 + Psyr_2868 0.45 +0.4 3,443,094 + Psyr_2868 0.45 -0.1 3,443,094 + Psyr_2868 0.45 +1.5 3,443,094 + Psyr_2868 0.45 +0.0 3,443,095 - Psyr_2868 0.45 +0.1 3,443,095 - Psyr_2868 0.45 +0.2 3,443,095 - Psyr_2868 0.45 +0.4 3,443,095 - Psyr_2868 0.45 -0.2 3,443,095 - Psyr_2868 0.45 -1.3 3,443,452 - -0.5 3,443,496 + +0.2 3,443,496 + +0.6 3,443,501 - -2.0 3,443,501 - +0.6 3,443,564 - -1.4 3,443,736 + -0.2 3,443,737 - +0.4
Or see this region's nucleotide sequence