Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1133

Experiment: DMSO

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	DMSO
1,282,874	+				+0.4
1,282,874	+				+0.7
1,282,874	+				-0.2
1,282,875	-				+0.4
1,282,880	+				+0.0
1,283,022	+		Psyr_1132	0.15	+0.9
1,283,030	-		Psyr_1132	0.16	-0.1
1,283,030	-		Psyr_1132	0.16	+1.5
1,283,030	-		Psyr_1132	0.16	+0.4
1,283,045	+		Psyr_1132	0.18	-1.1
1,283,046	-		Psyr_1132	0.18	-2.0
1,283,224	-		Psyr_1132	0.40	+0.5
1,283,224	-		Psyr_1132	0.40	-1.7
1,283,278	-		Psyr_1132	0.47	-0.2
1,283,337	+		Psyr_1132	0.54	+0.4
1,283,338	-		Psyr_1132	0.55	+0.3
1,283,349	+		Psyr_1132	0.56	+0.5
1,283,349	+		Psyr_1132	0.56	+0.6
1,283,349	+		Psyr_1132	0.56	-0.7
1,283,349	+		Psyr_1132	0.56	-0.7
1,283,349	+		Psyr_1132	0.56	+0.6
1,283,350	-		Psyr_1132	0.56	+0.9
1,283,491	-		Psyr_1132	0.74	-0.9
1,283,781	-				-1.6
1,283,814	+				+0.1
1,283,814	+				+0.5
1,283,851	-				+0.2
1,283,853	+				-1.7
1,283,853	+				-0.7
1,283,853	+				+0.6
1,283,854	-				+0.2
1,283,862	+				+0.0
1,283,863	-				+0.1
1,284,048	+				-0.1
1,284,048	+				+0.8
1,284,048	+				-0.0
1,284,048	+				+0.1
1,284,049	-				-0.8
1,284,053	+				-0.6
1,284,053	+				+0.6
1,284,053	+				-0.1
1,284,053	+				-0.4
1,284,053	+				+1.7
1,284,053	+				+0.7
1,284,053	+				-0.5
1,284,053	+				-1.2
1,284,053	+				+0.3
1,284,053	+				-2.0
1,284,054	-				+0.0
1,284,054	-				-0.2
1,284,054	-				+0.4
1,284,054	-				-1.1
1,284,078	+				+0.1
1,284,078	+				+0.2
1,284,078	+				+0.4
1,284,078	+				-0.2
1,284,082	+				+1.3
1,284,082	+				+0.5
1,284,082	+				+0.6
1,284,082	+				+0.3
1,284,082	+				+0.4
1,284,083	-				-0.7
1,284,083	-				+0.6
1,284,083	-				-0.1
1,284,346	+		Psyr_1133	0.20	-0.0
1,284,391	-		Psyr_1133	0.22	+0.9
1,284,397	+		Psyr_1133	0.22	-0.7
1,284,397	+		Psyr_1133	0.22	+0.5
1,284,397	+		Psyr_1133	0.22	-0.5
1,284,397	+		Psyr_1133	0.22	+0.3
1,284,398	-		Psyr_1133	0.22	-0.5
1,284,448	+		Psyr_1133	0.24	-2.1
1,284,448	+		Psyr_1133	0.24	+0.9
1,284,448	+		Psyr_1133	0.24	-1.0
1,284,449	-		Psyr_1133	0.24	-1.6
1,284,449	-		Psyr_1133	0.24	-0.5
1,284,449	-		Psyr_1133	0.24	-0.2
1,284,451	+		Psyr_1133	0.24	+0.1
1,284,451	+		Psyr_1133	0.24	+0.4
1,284,451	+		Psyr_1133	0.24	+0.5
1,284,452	-		Psyr_1133	0.25	-0.1
1,284,452	-		Psyr_1133	0.25	-0.0
1,284,452	-		Psyr_1133	0.25	+0.4
1,284,452	-		Psyr_1133	0.25	-0.1
1,284,452	-		Psyr_1133	0.25	+0.5
1,284,555	+		Psyr_1133	0.29	+1.9
1,284,555	+		Psyr_1133	0.29	-0.8
1,284,556	-		Psyr_1133	0.29	-1.9
1,284,703	+		Psyr_1133	0.34	+0.7
1,284,703	+		Psyr_1133	0.34	-0.5
1,284,704	-		Psyr_1133	0.34	+0.8
1,284,820	+		Psyr_1133	0.39	+0.8
1,284,820	+		Psyr_1133	0.39	-0.6
1,284,820	+		Psyr_1133	0.39	-0.7
1,284,821	-		Psyr_1133	0.39	-0.7
1,284,821	-		Psyr_1133	0.39	+1.0
1,284,821	-		Psyr_1133	0.39	+0.4
1,284,878	+		Psyr_1133	0.41	+0.3
1,284,879	-		Psyr_1133	0.41	+0.6
1,284,879	-		Psyr_1133	0.41	+1.0
1,285,018	+		Psyr_1133	0.47	+0.4
1,285,018	+		Psyr_1133	0.47	-0.4
1,285,018	+		Psyr_1133	0.47	+0.4
1,285,018	+		Psyr_1133	0.47	+0.5
1,285,018	+		Psyr_1133	0.47	+0.3
1,285,019	-		Psyr_1133	0.47	+0.3
1,285,019	-		Psyr_1133	0.47	+0.6
1,285,019	-		Psyr_1133	0.47	-0.0
1,285,072	+		Psyr_1133	0.49	-0.4
1,285,073	-		Psyr_1133	0.49	+0.8
1,285,088	+		Psyr_1133	0.50	+0.9
1,285,088	+		Psyr_1133	0.50	+2.1
1,285,088	+		Psyr_1133	0.50	-1.3
1,285,088	+		Psyr_1133	0.50	-0.1
1,285,088	+		Psyr_1133	0.50	+0.6
1,285,088	+		Psyr_1133	0.50	+0.2
1,285,089	-		Psyr_1133	0.50	-0.2
1,285,089	-		Psyr_1133	0.50	+0.6
1,285,089	-		Psyr_1133	0.50	+0.7
1,285,089	-		Psyr_1133	0.50	-0.2
1,285,089	-		Psyr_1133	0.50	-0.2
1,285,089	-		Psyr_1133	0.50	+0.4
1,285,089	-		Psyr_1133	0.50	+0.2
1,285,204	-		Psyr_1133	0.54	+0.5
1,285,365	-		Psyr_1133	0.61	+0.3
1,285,365	-		Psyr_1133	0.61	+0.3
1,285,447	+		Psyr_1133	0.64	-0.6
1,285,448	-		Psyr_1133	0.64	+0.8
1,285,448	-		Psyr_1133	0.64	-1.6
1,285,448	-		Psyr_1133	0.64	-1.3
1,285,456	+		Psyr_1133	0.64	+0.1
1,285,456	+		Psyr_1133	0.64	-0.7
1,285,456	+		Psyr_1133	0.64	-0.4
1,285,456	+		Psyr_1133	0.64	-2.8
1,285,456	+		Psyr_1133	0.64	-0.1
1,285,456	+		Psyr_1133	0.64	+1.7
1,285,456	+		Psyr_1133	0.64	+0.2
1,285,456	+		Psyr_1133	0.64	+2.1
1,285,456	+		Psyr_1133	0.64	-2.0
1,285,457	-		Psyr_1133	0.64	-0.7
1,285,457	-		Psyr_1133	0.64	+1.6
1,285,457	-		Psyr_1133	0.64	+0.0
1,285,483	+		Psyr_1133	0.65	+0.8
1,285,484	-		Psyr_1133	0.65	-0.3
1,285,484	-		Psyr_1133	0.65	+0.7
1,285,484	-		Psyr_1133	0.65	-1.0
1,285,484	-		Psyr_1133	0.65	+0.7
1,285,636	+		Psyr_1133	0.71	+0.4
1,285,636	+		Psyr_1133	0.71	+0.1
1,285,690	+		Psyr_1133	0.73	-0.2
1,285,691	-		Psyr_1133	0.73	-0.2
1,285,786	-		Psyr_1133	0.77	+0.7
1,285,786	-		Psyr_1133	0.77	-0.5
1,285,786	-		Psyr_1133	0.77	+0.1
1,285,786	-		Psyr_1133	0.77	-0.8
1,285,786	-		Psyr_1133	0.77	-0.1
1,285,801	+		Psyr_1133	0.78	-0.1
1,285,801	+		Psyr_1133	0.78	+0.3
1,285,802	-		Psyr_1133	0.78	-0.9
1,285,979	-		Psyr_1133	0.85	-0.6
1,286,336	-				+1.2
1,286,354	+				-1.9
1,286,462	-		Psyr_1134	0.13	+0.6
1,286,530	+		Psyr_1134	0.22	+1.3
1,286,662	-		Psyr_1134	0.38	-0.2
1,286,709	+		Psyr_1134	0.44	+0.2
1,286,709	+		Psyr_1134	0.44	+0.9
1,286,709	+		Psyr_1134	0.44	+0.6
1,286,709	+		Psyr_1134	0.44	-0.5
1,286,709	+		Psyr_1134	0.44	-0.3
1,286,709	+		Psyr_1134	0.44	-0.0
1,286,709	+		Psyr_1134	0.44	+0.6
1,286,709	+		Psyr_1134	0.44	-0.8
1,286,709	+		Psyr_1134	0.44	+1.2
1,286,709	+		Psyr_1134	0.44	+0.4
1,286,709	+		Psyr_1134	0.44	-0.6
1,286,709	+		Psyr_1134	0.44	+0.4
1,286,709	+		Psyr_1134	0.44	-0.1
1,286,709	+		Psyr_1134	0.44	+0.5
1,286,710	-		Psyr_1134	0.44	-0.5
1,286,710	-		Psyr_1134	0.44	-1.3
1,286,710	-		Psyr_1134	0.44	-0.2
1,286,710	-		Psyr_1134	0.44	-0.5
1,286,710	-		Psyr_1134	0.44	-3.0
1,286,710	-		Psyr_1134	0.44	-1.3
1,286,710	-		Psyr_1134	0.44	+1.1
1,286,710	-		Psyr_1134	0.44	+0.1
1,286,710	-		Psyr_1134	0.44	-0.1
1,286,710	-		Psyr_1134	0.44	-0.8
1,286,710	-		Psyr_1134	0.44	+1.3
1,286,710	-		Psyr_1134	0.44	-1.2
1,286,710	-		Psyr_1134	0.44	-0.2
1,286,710	-		Psyr_1134	0.44	-1.3
1,286,788	-		Psyr_1134	0.54	+0.3
1,287,051	+		Psyr_1134	0.88	-1.5
1,287,147	+				-0.3
1,287,147	+				+1.4
1,287,200	+				+0.3
1,287,200	+				-0.8
1,287,234	+				-0.4
1,287,234	+				+0.9
1,287,283	-		Psyr_1135	0.14	+0.1