Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0050

Experiment: DMSO

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0049 and Psyr_0050 are separated by 156 nucleotidesPsyr_0050 and Psyr_0051 are separated by 67 nucleotidesPsyr_0051 and Psyr_0052 are separated by 16 nucleotides Psyr_0049: Psyr_0049 - Cytochrome c, class I:Iron permease FTR1, at 49,110 to 51,008 _0049 Psyr_0050: Psyr_0050 - Lysine exporter protein (LYSE/YGGA), at 51,165 to 51,797 _0050 Psyr_0051: Psyr_0051 - conserved hypothetical protein, at 51,865 to 52,458 _0051 Psyr_0052: Psyr_0052 - ABC transporter, at 52,475 to 54,385 _0052 Position (kb) 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 50.176 kb on - strand, within Psyr_0049at 50.185 kb on + strand, within Psyr_0049at 50.186 kb on - strand, within Psyr_0049at 50.186 kb on - strand, within Psyr_0049at 50.186 kb on - strand, within Psyr_0049at 50.186 kb on - strand, within Psyr_0049at 50.214 kb on + strand, within Psyr_0049at 50.214 kb on + strand, within Psyr_0049at 50.214 kb on + strand, within Psyr_0049at 50.214 kb on + strand, within Psyr_0049at 50.215 kb on - strand, within Psyr_0049at 50.215 kb on - strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.368 kb on + strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.369 kb on - strand, within Psyr_0049at 50.377 kb on - strand, within Psyr_0049at 50.377 kb on - strand, within Psyr_0049at 50.458 kb on + strand, within Psyr_0049at 50.458 kb on + strand, within Psyr_0049at 50.459 kb on - strand, within Psyr_0049at 50.459 kb on - strand, within Psyr_0049at 50.459 kb on - strand, within Psyr_0049at 50.467 kb on + strand, within Psyr_0049at 50.468 kb on - strandat 50.591 kb on - strand, within Psyr_0049at 50.591 kb on - strand, within Psyr_0049at 50.830 kb on + strandat 50.831 kb on - strandat 50.890 kb on + strandat 50.977 kb on - strandat 51.010 kb on - strandat 51.010 kb on - strandat 51.063 kb on + strandat 51.063 kb on + strandat 51.063 kb on + strandat 51.063 kb on + strandat 51.064 kb on - strandat 51.064 kb on - strandat 51.100 kb on + strandat 51.101 kb on - strandat 51.299 kb on - strand, within Psyr_0050at 51.299 kb on - strand, within Psyr_0050at 51.434 kb on + strand, within Psyr_0050at 51.434 kb on + strand, within Psyr_0050at 51.456 kb on + strand, within Psyr_0050at 51.456 kb on + strand, within Psyr_0050at 51.457 kb on - strand, within Psyr_0050at 51.544 kb on + strand, within Psyr_0050at 51.544 kb on + strand, within Psyr_0050at 51.544 kb on + strand, within Psyr_0050at 51.553 kb on + strand, within Psyr_0050at 51.553 kb on + strand, within Psyr_0050at 51.554 kb on - strand, within Psyr_0050at 51.752 kb on + strandat 51.753 kb on - strandat 51.833 kb on + strandat 51.833 kb on + strandat 51.866 kb on + strandat 51.866 kb on + strandat 51.867 kb on - strandat 52.366 kb on + strand, within Psyr_0051at 52.366 kb on + strand, within Psyr_0051at 52.366 kb on + strand, within Psyr_0051at 52.367 kb on - strand, within Psyr_0051at 52.370 kb on + strand, within Psyr_0051at 52.370 kb on + strand, within Psyr_0051at 52.371 kb on - strand, within Psyr_0051at 52.371 kb on - strand, within Psyr_0051at 52.620 kb on + strandat 52.620 kb on + strandat 52.620 kb on + strandat 52.620 kb on + strandat 52.620 kb on + strandat 52.620 kb on + strandat 52.621 kb on - strandat 52.621 kb on - strandat 52.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO
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50,176 - Psyr_0049 0.56 +0.6
50,185 + Psyr_0049 0.57 -0.9
50,186 - Psyr_0049 0.57 -0.2
50,186 - Psyr_0049 0.57 +0.8
50,186 - Psyr_0049 0.57 -2.3
50,186 - Psyr_0049 0.57 +0.0
50,214 + Psyr_0049 0.58 +0.8
50,214 + Psyr_0049 0.58 -0.2
50,214 + Psyr_0049 0.58 -1.2
50,214 + Psyr_0049 0.58 +1.7
50,215 - Psyr_0049 0.58 +0.6
50,215 - Psyr_0049 0.58 +1.0
50,368 + Psyr_0049 0.66 -0.4
50,368 + Psyr_0049 0.66 -0.7
50,368 + Psyr_0049 0.66 -0.6
50,368 + Psyr_0049 0.66 -0.4
50,368 + Psyr_0049 0.66 -0.9
50,368 + Psyr_0049 0.66 -0.4
50,368 + Psyr_0049 0.66 -1.6
50,368 + Psyr_0049 0.66 +1.7
50,368 + Psyr_0049 0.66 -0.1
50,368 + Psyr_0049 0.66 -0.4
50,368 + Psyr_0049 0.66 -1.3
50,368 + Psyr_0049 0.66 +0.3
50,368 + Psyr_0049 0.66 -0.1
50,368 + Psyr_0049 0.66 -0.3
50,368 + Psyr_0049 0.66 -1.2
50,368 + Psyr_0049 0.66 +0.3
50,368 + Psyr_0049 0.66 -0.6
50,368 + Psyr_0049 0.66 -1.1
50,368 + Psyr_0049 0.66 -0.5
50,368 + Psyr_0049 0.66 -1.1
50,368 + Psyr_0049 0.66 +0.1
50,368 + Psyr_0049 0.66 +0.7
50,368 + Psyr_0049 0.66 +0.1
50,369 - Psyr_0049 0.66 -0.3
50,369 - Psyr_0049 0.66 -0.6
50,369 - Psyr_0049 0.66 -0.4
50,369 - Psyr_0049 0.66 +2.6
50,369 - Psyr_0049 0.66 -0.3
50,369 - Psyr_0049 0.66 -0.4
50,369 - Psyr_0049 0.66 -0.3
50,369 - Psyr_0049 0.66 -1.3
50,369 - Psyr_0049 0.66 +0.3
50,369 - Psyr_0049 0.66 -0.1
50,369 - Psyr_0049 0.66 +0.0
50,369 - Psyr_0049 0.66 -0.5
50,369 - Psyr_0049 0.66 +1.4
50,369 - Psyr_0049 0.66 +0.1
50,369 - Psyr_0049 0.66 +0.7
50,369 - Psyr_0049 0.66 -1.2
50,369 - Psyr_0049 0.66 -1.3
50,369 - Psyr_0049 0.66 -0.2
50,369 - Psyr_0049 0.66 +0.2
50,377 - Psyr_0049 0.67 -0.7
50,377 - Psyr_0049 0.67 -0.5
50,458 + Psyr_0049 0.71 +0.4
50,458 + Psyr_0049 0.71 -1.1
50,459 - Psyr_0049 0.71 -0.0
50,459 - Psyr_0049 0.71 +0.3
50,459 - Psyr_0049 0.71 -0.4
50,467 + Psyr_0049 0.71 +0.1
50,468 - -1.4
50,591 - Psyr_0049 0.78 +0.3
50,591 - Psyr_0049 0.78 +1.5
50,830 + +0.6
50,831 - -0.6
50,890 + -1.2
50,977 - +0.4
51,010 - -0.7
51,010 - +1.3
51,063 + +0.5
51,063 + -0.3
51,063 + +1.1
51,063 + +0.1
51,064 - -0.4
51,064 - +0.3
51,100 + +0.5
51,101 - -0.5
51,299 - Psyr_0050 0.21 +1.0
51,299 - Psyr_0050 0.21 +1.0
51,434 + Psyr_0050 0.42 +0.9
51,434 + Psyr_0050 0.42 -0.3
51,456 + Psyr_0050 0.46 +0.6
51,456 + Psyr_0050 0.46 -1.7
51,457 - Psyr_0050 0.46 -0.2
51,544 + Psyr_0050 0.60 +0.1
51,544 + Psyr_0050 0.60 +0.3
51,544 + Psyr_0050 0.60 -0.4
51,553 + Psyr_0050 0.61 -0.6
51,553 + Psyr_0050 0.61 +0.8
51,554 - Psyr_0050 0.61 +0.3
51,752 + +2.1
51,753 - -0.6
51,833 + +0.7
51,833 + -2.4
51,866 + +0.7
51,866 + +1.1
51,867 - -1.4
52,366 + Psyr_0051 0.84 +0.7
52,366 + Psyr_0051 0.84 +1.1
52,366 + Psyr_0051 0.84 -0.4
52,367 - Psyr_0051 0.85 -0.4
52,370 + Psyr_0051 0.85 -0.9
52,370 + Psyr_0051 0.85 -0.3
52,371 - Psyr_0051 0.85 -1.1
52,371 - Psyr_0051 0.85 +0.3
52,620 + -0.3
52,620 + -0.2
52,620 + +0.5
52,620 + +1.0
52,620 + +1.0
52,620 + +2.0
52,621 - +0.1
52,621 - +0.9
52,621 - +0.7

Or see this region's nucleotide sequence