Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5039

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
5,977,717	+				-0.3
5,977,717	+				+0.3
5,977,717	+				+0.2
5,977,717	+				-2.3
5,977,718	-				+1.3
5,977,718	-				+0.2
5,977,718	-				-0.4
5,977,718	-				+1.1
5,977,718	-				+0.2
5,977,718	-				+0.8
5,977,718	-				+0.6
5,977,718	-				-1.9
5,977,741	+				-0.7
5,977,741	+				-0.7
5,977,741	+				-3.0
5,977,741	+				-1.5
5,977,741	+				-2.9
5,977,742	-				-1.2
5,977,742	-				-1.9
5,977,742	-				-2.3
5,977,742	-				-2.5
5,977,742	-				-1.2
5,977,742	-				-0.3
5,977,742	-				-1.8
5,977,742	-				-0.8
5,977,781	+				-2.2
5,977,816	+		Psyr_5038	0.12	-1.9
5,977,816	+		Psyr_5038	0.12	-0.5
5,977,816	+		Psyr_5038	0.12	-3.7
5,977,816	+		Psyr_5038	0.12	+0.1
5,977,816	+		Psyr_5038	0.12	-2.9
5,977,816	+		Psyr_5038	0.12	-2.9
5,977,816	+		Psyr_5038	0.12	-0.0
5,977,816	+		Psyr_5038	0.12	+1.3
5,977,816	+		Psyr_5038	0.12	-0.7
5,977,816	+		Psyr_5038	0.12	-2.0
5,977,816	+		Psyr_5038	0.12	-0.3
5,977,817	-		Psyr_5038	0.12	-0.2
5,977,817	-		Psyr_5038	0.12	-0.3
5,977,817	-		Psyr_5038	0.12	-0.2
5,977,817	-		Psyr_5038	0.12	-0.3
5,977,817	-		Psyr_5038	0.12	-0.8
5,977,817	-		Psyr_5038	0.12	-0.7
5,977,817	-		Psyr_5038	0.12	-0.3
5,977,817	-		Psyr_5038	0.12	-0.0
5,977,817	-		Psyr_5038	0.12	-0.3
5,977,817	-		Psyr_5038	0.12	+0.8
5,977,817	-		Psyr_5038	0.12	-2.0
5,977,817	-		Psyr_5038	0.12	-1.6
5,977,817	-		Psyr_5038	0.12	-1.3
5,977,817	-		Psyr_5038	0.12	-0.9
5,977,817	-		Psyr_5038	0.12	+0.3
5,977,820	+		Psyr_5038	0.12	-1.7
5,977,821	-		Psyr_5038	0.12	-1.3
5,977,821	-		Psyr_5038	0.12	-1.2
5,977,821	-		Psyr_5038	0.12	-1.2
5,977,821	-		Psyr_5038	0.12	-1.9
5,977,821	-		Psyr_5038	0.12	+0.8
5,977,831	+		Psyr_5038	0.13	+0.3
5,977,832	-		Psyr_5038	0.14	-0.8
5,977,885	+		Psyr_5038	0.20	-1.0
5,977,886	-		Psyr_5038	0.20	-3.1
5,977,886	-		Psyr_5038	0.20	-1.6
5,977,903	+		Psyr_5038	0.22	-0.3
5,978,171	-		Psyr_5038	0.54	-0.9
5,978,254	+		Psyr_5038	0.64	-0.3
5,978,254	+		Psyr_5038	0.64	+0.7
5,978,254	+		Psyr_5038	0.64	+0.3
5,978,254	+		Psyr_5038	0.64	+1.3
5,978,254	+		Psyr_5038	0.64	+1.3
5,978,254	+		Psyr_5038	0.64	+1.3
5,978,255	-		Psyr_5038	0.64	-3.4
5,978,255	-		Psyr_5038	0.64	-0.8
5,978,255	-		Psyr_5038	0.64	+0.2
5,978,255	-		Psyr_5038	0.64	-1.0
5,978,255	-		Psyr_5038	0.64	-1.2
5,978,255	-		Psyr_5038	0.64	-0.2
5,978,255	-		Psyr_5038	0.64	-1.6
5,978,255	-		Psyr_5038	0.64	-0.0
5,978,255	-		Psyr_5038	0.64	-2.6
5,978,255	-		Psyr_5038	0.64	+0.2
5,978,270	-		Psyr_5038	0.66	-0.4
5,978,435	-		Psyr_5038	0.86	-0.1
5,978,435	-		Psyr_5038	0.86	-3.9
5,978,638	+				-2.6
5,978,638	+				-2.6
5,978,638	+				-1.9
5,978,639	-				-0.6
5,978,639	-				+0.3
5,978,639	-				+0.7
5,978,639	-				+0.6
5,978,657	+				-1.7
5,978,701	-				-0.4
5,978,722	+				-1.3
5,978,722	+				-2.0
5,978,723	-				-0.4
5,978,773	+				-3.8
5,978,773	+				-1.3
5,978,773	+				-1.8
5,978,773	+				-2.7
5,978,773	+				-1.1
5,978,773	+				-2.8
5,978,773	+				-3.2
5,978,774	-				+0.3
5,978,774	-				-1.6
5,978,774	-				-1.9
5,978,818	+		Psyr_5039	0.12	-2.4
5,978,824	+		Psyr_5039	0.12	-1.3
5,978,824	+		Psyr_5039	0.12	-2.4
5,978,824	+		Psyr_5039	0.12	-3.5
5,978,824	+		Psyr_5039	0.12	-1.0
5,978,824	+		Psyr_5039	0.12	-0.7
5,978,824	+		Psyr_5039	0.12	-2.9
5,978,824	+		Psyr_5039	0.12	-2.2
5,978,824	+		Psyr_5039	0.12	-3.2
5,978,825	-		Psyr_5039	0.12	-1.3
5,978,825	-		Psyr_5039	0.12	-1.5
5,978,825	-		Psyr_5039	0.12	-1.0
5,979,174	+		Psyr_5039	0.33	-1.9
5,979,174	+		Psyr_5039	0.33	-1.2
5,979,174	+		Psyr_5039	0.33	-3.4
5,979,174	+		Psyr_5039	0.33	-2.2
5,979,174	+		Psyr_5039	0.33	-1.0
5,979,174	+		Psyr_5039	0.33	-0.7
5,979,174	+		Psyr_5039	0.33	-1.3
5,979,174	+		Psyr_5039	0.33	-3.6
5,979,175	-		Psyr_5039	0.33	-2.0
5,979,175	-		Psyr_5039	0.33	-1.6
5,979,175	-		Psyr_5039	0.33	-0.3
5,979,175	-		Psyr_5039	0.33	-1.1
5,979,175	-		Psyr_5039	0.33	-1.9
5,979,175	-		Psyr_5039	0.33	-0.8
5,979,175	-		Psyr_5039	0.33	-0.8
5,979,175	-		Psyr_5039	0.33	-1.5
5,979,175	-		Psyr_5039	0.33	-1.2
5,979,175	-		Psyr_5039	0.33	-2.0
5,979,175	-		Psyr_5039	0.33	-1.6
5,979,175	-		Psyr_5039	0.33	-1.0
5,979,175	-		Psyr_5039	0.33	-2.5
5,979,175	-		Psyr_5039	0.33	-0.4
5,979,178	+		Psyr_5039	0.33	-3.9
5,979,178	+		Psyr_5039	0.33	-3.7
5,979,178	+		Psyr_5039	0.33	-3.8
5,979,178	+		Psyr_5039	0.33	-2.9
5,979,178	+		Psyr_5039	0.33	-0.3
5,979,178	+		Psyr_5039	0.33	+0.3
5,979,178	+		Psyr_5039	0.33	-1.2
5,979,178	+		Psyr_5039	0.33	-2.4
5,979,178	+		Psyr_5039	0.33	-2.2
5,979,178	+		Psyr_5039	0.33	-1.5
5,979,179	-		Psyr_5039	0.34	-0.1
5,979,179	-		Psyr_5039	0.34	+0.3
5,979,179	-		Psyr_5039	0.34	-1.3
5,979,179	-		Psyr_5039	0.34	-2.9
5,979,179	-		Psyr_5039	0.34	-0.8
5,979,208	-		Psyr_5039	0.35	-1.1
5,979,283	+		Psyr_5039	0.40	-1.8
5,979,295	+		Psyr_5039	0.40	-0.5
5,979,296	-		Psyr_5039	0.41	-2.7
5,979,442	+		Psyr_5039	0.49	-2.1
5,979,442	+		Psyr_5039	0.49	-2.7
5,979,442	+		Psyr_5039	0.49	-2.8
5,979,443	-		Psyr_5039	0.49	-3.2
5,979,443	-		Psyr_5039	0.49	-2.5
5,979,443	-		Psyr_5039	0.49	-0.7
5,979,443	-		Psyr_5039	0.49	-0.3
5,979,484	+		Psyr_5039	0.52	-2.7
5,979,604	+		Psyr_5039	0.59	-3.0
5,979,604	+		Psyr_5039	0.59	-2.8
5,979,605	-		Psyr_5039	0.59	-2.9
5,979,750	-		Psyr_5039	0.68	-2.9
5,979,751	+		Psyr_5039	0.68	-1.7
5,979,751	+		Psyr_5039	0.68	-3.5
5,979,751	+		Psyr_5039	0.68	-3.1
5,979,751	+		Psyr_5039	0.68	-3.6
5,979,751	+		Psyr_5039	0.68	-2.6
5,979,751	+		Psyr_5039	0.68	-2.4
5,979,751	+		Psyr_5039	0.68	-2.3
5,979,751	+		Psyr_5039	0.68	-1.0
5,979,751	+		Psyr_5039	0.68	-2.2
5,979,751	+		Psyr_5039	0.68	-0.9
5,979,752	-		Psyr_5039	0.68	-1.6
5,979,752	-		Psyr_5039	0.68	-1.7
5,979,752	-		Psyr_5039	0.68	-1.6
5,979,752	-		Psyr_5039	0.68	-1.4
5,979,752	-		Psyr_5039	0.68	-1.8
5,979,752	-		Psyr_5039	0.68	-2.4
5,979,752	-		Psyr_5039	0.68	-2.6
5,979,752	-		Psyr_5039	0.68	-3.7
5,979,752	-		Psyr_5039	0.68	-1.0
5,979,752	-		Psyr_5039	0.68	-1.7
5,979,860	-		Psyr_5039	0.74	-2.1
5,979,865	+		Psyr_5039	0.75	-2.4
5,979,940	-		Psyr_5039	0.79	-2.6
5,979,988	+		Psyr_5039	0.82	-1.8
5,979,988	+		Psyr_5039	0.82	-3.1
5,979,988	+		Psyr_5039	0.82	-4.5
5,979,988	+		Psyr_5039	0.82	-3.4
5,979,989	-		Psyr_5039	0.82	-1.7
5,979,989	-		Psyr_5039	0.82	-1.2
5,979,989	-		Psyr_5039	0.82	+0.2
5,979,989	-		Psyr_5039	0.82	+0.3
5,979,989	-		Psyr_5039	0.82	-2.3
5,979,989	-		Psyr_5039	0.82	-1.9
5,979,989	-		Psyr_5039	0.82	-1.3
5,979,989	-		Psyr_5039	0.82	-0.9
5,979,989	-		Psyr_5039	0.82	-1.0
5,979,989	-		Psyr_5039	0.82	-1.6
5,979,989	-		Psyr_5039	0.82	+1.7
5,979,989	-		Psyr_5039	0.82	-0.8
5,980,062	+		Psyr_5039	0.86	+0.3
5,980,062	+		Psyr_5039	0.86	-4.2
5,980,063	-		Psyr_5039	0.86	-0.6
5,980,063	-		Psyr_5039	0.86	-1.3
5,980,297	+				-1.8
5,980,298	-				-3.2
5,980,298	-				-0.8
5,980,306	+				-2.1
5,980,306	+				-2.9
5,980,318	+				-1.9
5,980,319	-				+0.5
5,980,319	-				+0.3
5,980,511	+				-2.5
5,980,512	-				-1.9
5,980,709	-		Psyr_5040	0.18	-0.2
5,980,709	-		Psyr_5040	0.18	-1.0
5,980,771	+		Psyr_5040	0.21	-0.9
5,980,771	+		Psyr_5040	0.21	-2.9
5,980,771	+		Psyr_5040	0.21	-3.6
5,980,771	+		Psyr_5040	0.21	-1.9
5,980,771	+		Psyr_5040	0.21	-1.4
5,980,772	-		Psyr_5040	0.21	+1.5
5,980,772	-		Psyr_5040	0.21	-2.6
5,980,772	-		Psyr_5040	0.21	-0.7
5,980,917	-		Psyr_5040	0.27	-1.4
5,981,134	+		Psyr_5040	0.37	-4.4
5,981,134	+		Psyr_5040	0.37	-2.2
5,981,135	-		Psyr_5040	0.37	+0.1
5,981,143	+		Psyr_5040	0.37	-2.0
5,981,143	+		Psyr_5040	0.37	-3.1
5,981,143	+		Psyr_5040	0.37	-1.7
5,981,143	+		Psyr_5040	0.37	-3.7
5,981,143	+		Psyr_5040	0.37	-0.4
5,981,143	+		Psyr_5040	0.37	-3.2
5,981,143	+		Psyr_5040	0.37	-3.9
5,981,143	+		Psyr_5040	0.37	-1.4
5,981,143	+		Psyr_5040	0.37	-1.0
5,981,143	+		Psyr_5040	0.37	-3.6
5,981,144	-		Psyr_5040	0.37	-1.8
5,981,144	-		Psyr_5040	0.37	-0.7
5,981,144	-		Psyr_5040	0.37	-0.5
5,981,144	-		Psyr_5040	0.37	-1.5
5,981,144	-		Psyr_5040	0.37	-0.5
5,981,144	-		Psyr_5040	0.37	-1.0
5,981,144	-		Psyr_5040	0.37	-0.9
5,981,212	+		Psyr_5040	0.40	-0.3
5,981,213	-		Psyr_5040	0.40	-2.0
5,981,213	-		Psyr_5040	0.40	-2.0
5,981,213	-		Psyr_5040	0.40	-3.1
5,981,278	+		Psyr_5040	0.43	+0.1
5,981,278	+		Psyr_5040	0.43	-2.2
5,981,278	+		Psyr_5040	0.43	-2.0
5,981,278	+		Psyr_5040	0.43	-1.5
5,981,278	+		Psyr_5040	0.43	-1.8
5,981,278	+		Psyr_5040	0.43	-2.9
5,981,278	+		Psyr_5040	0.43	-2.8
5,981,278	+		Psyr_5040	0.43	-2.1
5,981,278	+		Psyr_5040	0.43	-1.3
5,981,278	+		Psyr_5040	0.43	-1.1
5,981,278	+		Psyr_5040	0.43	-2.0
5,981,279	-		Psyr_5040	0.43	-1.4
5,981,279	-		Psyr_5040	0.43	-2.0
5,981,279	-		Psyr_5040	0.43	-0.4
5,981,279	-		Psyr_5040	0.43	-4.3
5,981,279	-		Psyr_5040	0.43	-2.3
5,981,279	-		Psyr_5040	0.43	-1.6
5,981,279	-		Psyr_5040	0.43	-3.8
5,981,279	-		Psyr_5040	0.43	-1.4
5,981,279	-		Psyr_5040	0.43	-1.5
5,981,279	-		Psyr_5040	0.43	-1.1
5,981,279	-		Psyr_5040	0.43	-1.3