Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4735

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4734 and Psyr_4735 are separated by 445 nucleotidesPsyr_4735 and Psyr_4736 overlap by 8 nucleotides Psyr_4734: Psyr_4734 - transcriptional regulator, TetR family, at 5,612,941 to 5,613,534 _4734 Psyr_4735: Psyr_4735 - GTP-binding protein, HSR1-related protein, at 5,613,980 to 5,615,368 _4735 Psyr_4736: Psyr_4736 - conserved hypothetical protein, at 5,615,361 to 5,616,740 _4736 Position (kb) 5613 5614 5615 5616Strain fitness (log2 ratio) -2 -1 0 1at 5612.981 kb on + strandat 5613.413 kb on - strand, within Psyr_4734at 5613.571 kb on + strandat 5613.762 kb on + strandat 5613.762 kb on + strandat 5613.762 kb on + strandat 5613.762 kb on + strandat 5613.762 kb on + strandat 5613.762 kb on + strandat 5613.762 kb on + strandat 5613.762 kb on + strandat 5613.762 kb on + strandat 5613.763 kb on - strandat 5613.763 kb on - strandat 5613.763 kb on - strandat 5613.763 kb on - strandat 5613.763 kb on - strandat 5613.763 kb on - strandat 5613.763 kb on - strandat 5613.912 kb on - strandat 5613.912 kb on - strandat 5614.527 kb on + strand, within Psyr_4735at 5614.528 kb on - strand, within Psyr_4735at 5614.956 kb on + strand, within Psyr_4735at 5614.957 kb on - strand, within Psyr_4735at 5614.992 kb on + strand, within Psyr_4735at 5614.992 kb on + strand, within Psyr_4735at 5614.992 kb on + strand, within Psyr_4735at 5614.992 kb on + strand, within Psyr_4735at 5614.992 kb on + strand, within Psyr_4735at 5614.992 kb on + strand, within Psyr_4735at 5614.992 kb on + strand, within Psyr_4735at 5614.992 kb on + strand, within Psyr_4735at 5614.993 kb on - strand, within Psyr_4735at 5614.993 kb on - strand, within Psyr_4735at 5614.993 kb on - strand, within Psyr_4735at 5614.993 kb on - strand, within Psyr_4735at 5614.993 kb on - strand, within Psyr_4735at 5614.993 kb on - strand, within Psyr_4735at 5615.178 kb on + strand, within Psyr_4735at 5615.287 kb on + strandat 5615.287 kb on + strandat 5615.287 kb on + strandat 5615.288 kb on - strandat 5615.288 kb on - strandat 5615.288 kb on - strandat 5615.288 kb on - strandat 5615.317 kb on + strandat 5615.317 kb on + strandat 5615.654 kb on + strand, within Psyr_4736at 5615.654 kb on + strand, within Psyr_4736at 5615.724 kb on + strand, within Psyr_4736at 5615.848 kb on + strand, within Psyr_4736at 5616.350 kb on + strand, within Psyr_4736at 5616.351 kb on - strand, within Psyr_4736

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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5,612,981 + -1.5
5,613,413 - Psyr_4734 0.79 +1.5
5,613,571 + -2.2
5,613,762 + -0.2
5,613,762 + -0.2
5,613,762 + -1.3
5,613,762 + -1.7
5,613,762 + +0.0
5,613,762 + +0.1
5,613,762 + -1.2
5,613,762 + +0.0
5,613,762 + -0.1
5,613,763 - +0.3
5,613,763 - -0.0
5,613,763 - +0.5
5,613,763 - +0.4
5,613,763 - -0.5
5,613,763 - -1.2
5,613,763 - +0.2
5,613,912 - -0.6
5,613,912 - -0.7
5,614,527 + Psyr_4735 0.39 +0.7
5,614,528 - Psyr_4735 0.39 -1.0
5,614,956 + Psyr_4735 0.70 -0.4
5,614,957 - Psyr_4735 0.70 -0.7
5,614,992 + Psyr_4735 0.73 -0.4
5,614,992 + Psyr_4735 0.73 -0.3
5,614,992 + Psyr_4735 0.73 -0.4
5,614,992 + Psyr_4735 0.73 -1.0
5,614,992 + Psyr_4735 0.73 -1.8
5,614,992 + Psyr_4735 0.73 -0.1
5,614,992 + Psyr_4735 0.73 -0.8
5,614,992 + Psyr_4735 0.73 -0.2
5,614,993 - Psyr_4735 0.73 -0.6
5,614,993 - Psyr_4735 0.73 +0.3
5,614,993 - Psyr_4735 0.73 -0.4
5,614,993 - Psyr_4735 0.73 -0.2
5,614,993 - Psyr_4735 0.73 -1.0
5,614,993 - Psyr_4735 0.73 +1.3
5,615,178 + Psyr_4735 0.86 +0.4
5,615,287 + -2.6
5,615,287 + +0.4
5,615,287 + -0.4
5,615,288 - -0.2
5,615,288 - +0.3
5,615,288 - +0.7
5,615,288 - -0.6
5,615,317 + +0.4
5,615,317 + -0.7
5,615,654 + Psyr_4736 0.21 -1.7
5,615,654 + Psyr_4736 0.21 -0.3
5,615,724 + Psyr_4736 0.26 +0.9
5,615,848 + Psyr_4736 0.35 +0.0
5,616,350 + Psyr_4736 0.72 -0.0
5,616,351 - Psyr_4736 0.72 +0.4

Or see this region's nucleotide sequence