Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3680

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3678 and Psyr_3679 overlap by 4 nucleotidesPsyr_3679 and Psyr_3680 overlap by 4 nucleotidesPsyr_3680 and Psyr_3681 are separated by 25 nucleotides Psyr_3678: Psyr_3678 - adenosylcobinamide-phosphate synthase, at 4,364,433 to 4,365,341 _3678 Psyr_3679: Psyr_3679 - cob(II)yrinic acid a,c-diamide reductase, at 4,365,338 to 4,365,988 _3679 Psyr_3680: Psyr_3680 - hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase, at 4,365,985 to 4,367,280 _3680 Psyr_3681: Psyr_3681 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 4,367,306 to 4,367,917 _3681 Position (kb) 4365 4366 4367 4368Strain fitness (log2 ratio) -2 -1 0 1 2at 4365.366 kb on + strandat 4366.154 kb on + strand, within Psyr_3680at 4366.154 kb on + strand, within Psyr_3680at 4366.154 kb on + strand, within Psyr_3680at 4366.154 kb on + strand, within Psyr_3680at 4366.301 kb on + strand, within Psyr_3680at 4366.302 kb on - strand, within Psyr_3680at 4366.427 kb on + strand, within Psyr_3680at 4366.428 kb on - strand, within Psyr_3680at 4366.428 kb on - strand, within Psyr_3680at 4366.817 kb on - strand, within Psyr_3680at 4367.429 kb on + strand, within Psyr_3681at 4367.429 kb on + strand, within Psyr_3681at 4367.430 kb on - strand, within Psyr_3681at 4367.430 kb on - strand, within Psyr_3681at 4367.430 kb on - strand, within Psyr_3681at 4368.116 kb on + strandat 4368.116 kb on + strandat 4368.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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4,365,366 + +0.0
4,366,154 + Psyr_3680 0.13 +1.3
4,366,154 + Psyr_3680 0.13 -0.5
4,366,154 + Psyr_3680 0.13 -1.8
4,366,154 + Psyr_3680 0.13 -0.8
4,366,301 + Psyr_3680 0.24 +1.3
4,366,302 - Psyr_3680 0.24 -0.9
4,366,427 + Psyr_3680 0.34 +1.3
4,366,428 - Psyr_3680 0.34 +2.2
4,366,428 - Psyr_3680 0.34 -0.6
4,366,817 - Psyr_3680 0.64 +0.2
4,367,429 + Psyr_3681 0.20 +0.9
4,367,429 + Psyr_3681 0.20 +0.8
4,367,430 - Psyr_3681 0.20 -0.2
4,367,430 - Psyr_3681 0.20 -1.7
4,367,430 - Psyr_3681 0.20 -1.0
4,368,116 + -1.2
4,368,116 + -0.2
4,368,117 - -0.3

Or see this region's nucleotide sequence