Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2508

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2506 and Psyr_2507 are separated by 16 nucleotidesPsyr_2507 and Psyr_2508 are separated by 82 nucleotidesPsyr_2508 and Psyr_2509 are separated by 16 nucleotides Psyr_2506: Psyr_2506 - amino acid ABC transporter ATP-binding protein, PAAT family, at 2,915,281 to 2,916,066 _2506 Psyr_2507: Psyr_2507 - Endoribonuclease L-PSP, at 2,916,083 to 2,916,493 _2507 Psyr_2508: Psyr_2508 - transcriptional regulator, IclR family, at 2,916,576 to 2,917,340 _2508 Psyr_2509: Psyr_2509 - conserved hypothetical protein, at 2,917,357 to 2,918,562 _2509 Position (kb) 2916 2917 2918Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2916.112 kb on + strandat 2916.112 kb on + strandat 2916.112 kb on + strandat 2916.113 kb on - strandat 2916.113 kb on - strandat 2916.115 kb on + strandat 2916.213 kb on + strand, within Psyr_2507at 2916.213 kb on + strand, within Psyr_2507at 2916.392 kb on + strand, within Psyr_2507at 2916.393 kb on - strand, within Psyr_2507at 2916.472 kb on + strandat 2916.472 kb on + strandat 2916.473 kb on - strandat 2916.473 kb on - strandat 2916.473 kb on - strandat 2916.479 kb on + strandat 2916.492 kb on - strandat 2916.780 kb on + strand, within Psyr_2508at 2916.781 kb on - strand, within Psyr_2508at 2916.798 kb on + strand, within Psyr_2508at 2916.799 kb on - strand, within Psyr_2508at 2916.799 kb on - strand, within Psyr_2508at 2916.921 kb on + strand, within Psyr_2508at 2916.922 kb on - strand, within Psyr_2508at 2917.384 kb on - strandat 2918.131 kb on + strand, within Psyr_2509at 2918.131 kb on + strand, within Psyr_2509at 2918.131 kb on + strand, within Psyr_2509at 2918.131 kb on + strand, within Psyr_2509at 2918.131 kb on + strand, within Psyr_2509at 2918.132 kb on - strand, within Psyr_2509at 2918.132 kb on - strand, within Psyr_2509at 2918.132 kb on - strand, within Psyr_2509at 2918.132 kb on - strand, within Psyr_2509at 2918.132 kb on - strandat 2918.132 kb on - strand, within Psyr_2509at 2918.132 kb on - strand, within Psyr_2509at 2918.132 kb on - strand, within Psyr_2509at 2918.132 kb on - strand, within Psyr_2509at 2918.155 kb on + strand, within Psyr_2509at 2918.155 kb on + strand, within Psyr_2509at 2918.156 kb on - strand, within Psyr_2509at 2918.156 kb on - strand, within Psyr_2509at 2918.294 kb on + strand, within Psyr_2509at 2918.295 kb on - strand, within Psyr_2509at 2918.299 kb on + strand, within Psyr_2509

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,916,112 + -1.2
2,916,112 + -0.8
2,916,112 + -1.4
2,916,113 - +0.4
2,916,113 - -0.3
2,916,115 + -1.7
2,916,213 + Psyr_2507 0.32 -0.3
2,916,213 + Psyr_2507 0.32 +0.0
2,916,392 + Psyr_2507 0.75 +0.2
2,916,393 - Psyr_2507 0.75 +1.0
2,916,472 + -0.5
2,916,472 + +0.9
2,916,473 - +1.7
2,916,473 - -0.8
2,916,473 - -0.4
2,916,479 + -0.0
2,916,492 - +1.6
2,916,780 + Psyr_2508 0.27 -1.0
2,916,781 - Psyr_2508 0.27 +0.1
2,916,798 + Psyr_2508 0.29 +0.7
2,916,799 - Psyr_2508 0.29 +1.1
2,916,799 - Psyr_2508 0.29 +0.8
2,916,921 + Psyr_2508 0.45 +0.4
2,916,922 - Psyr_2508 0.45 +0.2
2,917,384 - +0.3
2,918,131 + Psyr_2509 0.64 +0.9
2,918,131 + Psyr_2509 0.64 -0.5
2,918,131 + Psyr_2509 0.64 -0.2
2,918,131 + Psyr_2509 0.64 -0.4
2,918,131 + Psyr_2509 0.64 -0.8
2,918,132 - Psyr_2509 0.64 -0.0
2,918,132 - Psyr_2509 0.64 -0.7
2,918,132 - Psyr_2509 0.64 +0.5
2,918,132 - Psyr_2509 0.64 +0.5
2,918,132 - -0.0
2,918,132 - Psyr_2509 0.64 +0.3
2,918,132 - Psyr_2509 0.64 -1.7
2,918,132 - Psyr_2509 0.64 +2.9
2,918,132 - Psyr_2509 0.64 -0.4
2,918,155 + Psyr_2509 0.66 -0.9
2,918,155 + Psyr_2509 0.66 +0.4
2,918,156 - Psyr_2509 0.66 +0.6
2,918,156 - Psyr_2509 0.66 -1.9
2,918,294 + Psyr_2509 0.78 -0.7
2,918,295 - Psyr_2509 0.78 +0.0
2,918,299 + Psyr_2509 0.78 +0.6

Or see this region's nucleotide sequence