Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2506 and Psyr_2507 are separated by 16 nucleotides Psyr_2507 and Psyr_2508 are separated by 82 nucleotides Psyr_2508 and Psyr_2509 are separated by 16 nucleotides
Psyr_2506: Psyr_2506 - amino acid ABC transporter ATP-binding protein, PAAT family, at 2,915,281 to 2,916,066
_2506
Psyr_2507: Psyr_2507 - Endoribonuclease L-PSP, at 2,916,083 to 2,916,493
_2507
Psyr_2508: Psyr_2508 - transcriptional regulator, IclR family, at 2,916,576 to 2,917,340
_2508
Psyr_2509: Psyr_2509 - conserved hypothetical protein, at 2,917,357 to 2,918,562
_2509
Position (kb)
2916
2917
2918 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2916.112 kb on + strand at 2916.112 kb on + strand at 2916.112 kb on + strand at 2916.113 kb on - strand at 2916.113 kb on - strand at 2916.115 kb on + strand at 2916.213 kb on + strand, within Psyr_2507 at 2916.213 kb on + strand, within Psyr_2507 at 2916.392 kb on + strand, within Psyr_2507 at 2916.393 kb on - strand, within Psyr_2507 at 2916.472 kb on + strand at 2916.472 kb on + strand at 2916.473 kb on - strand at 2916.473 kb on - strand at 2916.473 kb on - strand at 2916.479 kb on + strand at 2916.492 kb on - strand at 2916.780 kb on + strand, within Psyr_2508 at 2916.781 kb on - strand, within Psyr_2508 at 2916.798 kb on + strand, within Psyr_2508 at 2916.799 kb on - strand, within Psyr_2508 at 2916.799 kb on - strand, within Psyr_2508 at 2916.921 kb on + strand, within Psyr_2508 at 2916.922 kb on - strand, within Psyr_2508 at 2917.384 kb on - strand at 2918.131 kb on + strand, within Psyr_2509 at 2918.131 kb on + strand, within Psyr_2509 at 2918.131 kb on + strand, within Psyr_2509 at 2918.131 kb on + strand, within Psyr_2509 at 2918.131 kb on + strand, within Psyr_2509 at 2918.132 kb on - strand, within Psyr_2509 at 2918.132 kb on - strand, within Psyr_2509 at 2918.132 kb on - strand, within Psyr_2509 at 2918.132 kb on - strand, within Psyr_2509 at 2918.132 kb on - strand at 2918.132 kb on - strand, within Psyr_2509 at 2918.132 kb on - strand, within Psyr_2509 at 2918.132 kb on - strand, within Psyr_2509 at 2918.132 kb on - strand, within Psyr_2509 at 2918.155 kb on + strand, within Psyr_2509 at 2918.155 kb on + strand, within Psyr_2509 at 2918.156 kb on - strand, within Psyr_2509 at 2918.156 kb on - strand, within Psyr_2509 at 2918.294 kb on + strand, within Psyr_2509 at 2918.295 kb on - strand, within Psyr_2509 at 2918.299 kb on + strand, within Psyr_2509
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,916,112 + -1.2 2,916,112 + -0.8 2,916,112 + -1.4 2,916,113 - +0.4 2,916,113 - -0.3 2,916,115 + -1.7 2,916,213 + Psyr_2507 0.32 -0.3 2,916,213 + Psyr_2507 0.32 +0.0 2,916,392 + Psyr_2507 0.75 +0.2 2,916,393 - Psyr_2507 0.75 +1.0 2,916,472 + -0.5 2,916,472 + +0.9 2,916,473 - +1.7 2,916,473 - -0.8 2,916,473 - -0.4 2,916,479 + -0.0 2,916,492 - +1.6 2,916,780 + Psyr_2508 0.27 -1.0 2,916,781 - Psyr_2508 0.27 +0.1 2,916,798 + Psyr_2508 0.29 +0.7 2,916,799 - Psyr_2508 0.29 +1.1 2,916,799 - Psyr_2508 0.29 +0.8 2,916,921 + Psyr_2508 0.45 +0.4 2,916,922 - Psyr_2508 0.45 +0.2 2,917,384 - +0.3 2,918,131 + Psyr_2509 0.64 +0.9 2,918,131 + Psyr_2509 0.64 -0.5 2,918,131 + Psyr_2509 0.64 -0.2 2,918,131 + Psyr_2509 0.64 -0.4 2,918,131 + Psyr_2509 0.64 -0.8 2,918,132 - Psyr_2509 0.64 -0.0 2,918,132 - Psyr_2509 0.64 -0.7 2,918,132 - Psyr_2509 0.64 +0.5 2,918,132 - Psyr_2509 0.64 +0.5 2,918,132 - -0.0 2,918,132 - Psyr_2509 0.64 +0.3 2,918,132 - Psyr_2509 0.64 -1.7 2,918,132 - Psyr_2509 0.64 +2.9 2,918,132 - Psyr_2509 0.64 -0.4 2,918,155 + Psyr_2509 0.66 -0.9 2,918,155 + Psyr_2509 0.66 +0.4 2,918,156 - Psyr_2509 0.66 +0.6 2,918,156 - Psyr_2509 0.66 -1.9 2,918,294 + Psyr_2509 0.78 -0.7 2,918,295 - Psyr_2509 0.78 +0.0 2,918,299 + Psyr_2509 0.78 +0.6
Or see this region's nucleotide sequence