Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0517 and Psyr_0518 are separated by 142 nucleotides Psyr_0518 and Psyr_0519 are separated by 384 nucleotides
Psyr_0517: Psyr_0517 - Dihydrolipoamide acetyltransferase, at 574,465 to 576,138
_0517
Psyr_0518: Psyr_0518 - 2-oxo-acid dehydrogenase E1 component homodimeric type, at 576,281 to 578,926
_0518
Psyr_0519: Psyr_0519 - Glutamate-ammonia-ligase adenylyltransferase, at 579,311 to 582,268
_0519
Position (kb) 576
577
578
579 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 576.190 kb on - strand at 576.190 kb on - strand at 576.218 kb on - strand at 576.218 kb on - strand at 576.250 kb on - strand at 576.250 kb on - strand at 576.589 kb on - strand, within Psyr_0518 at 579.001 kb on - strand at 579.001 kb on - strand at 579.137 kb on - strand at 579.142 kb on - strand at 579.142 kb on - strand at 579.318 kb on + strand at 579.319 kb on - strand at 579.556 kb on + strand at 579.556 kb on + strand at 579.557 kb on - strand at 579.557 kb on - strand at 579.639 kb on + strand, within Psyr_0519 at 579.640 kb on - strand, within Psyr_0519 at 579.640 kb on - strand, within Psyr_0519 at 579.762 kb on - strand, within Psyr_0519 at 579.762 kb on - strand, within Psyr_0519 at 579.773 kb on + strand, within Psyr_0519 at 579.773 kb on + strand, within Psyr_0519 at 579.773 kb on + strand, within Psyr_0519 at 579.773 kb on + strand, within Psyr_0519 at 579.774 kb on - strand, within Psyr_0519
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 576,190 - -3.8 576,190 - -1.0 576,218 - +2.9 576,218 - -1.6 576,250 - +0.4 576,250 - -0.5 576,589 - Psyr_0518 0.12 +1.3 579,001 - -0.3 579,001 - -0.3 579,137 - -0.0 579,142 - +1.1 579,142 - +0.1 579,318 + +2.3 579,319 - +1.1 579,556 + -0.3 579,556 + -0.6 579,557 - +0.1 579,557 - +0.2 579,639 + Psyr_0519 0.11 +0.3 579,640 - Psyr_0519 0.11 -1.8 579,640 - Psyr_0519 0.11 -3.2 579,762 - Psyr_0519 0.15 -0.2 579,762 - Psyr_0519 0.15 -0.5 579,773 + Psyr_0519 0.16 -0.4 579,773 + Psyr_0519 0.16 -2.6 579,773 + Psyr_0519 0.16 +0.6 579,773 + Psyr_0519 0.16 +1.6 579,774 - Psyr_0519 0.16 -0.7
Or see this region's nucleotide sequence