Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3677 and Psyr_3678 overlap by 8 nucleotides Psyr_3678 and Psyr_3679 overlap by 4 nucleotides Psyr_3679 and Psyr_3680 overlap by 4 nucleotides
Psyr_3677: Psyr_3677 - Aminotransferase, class I and II, at 4,363,436 to 4,364,440
_3677
Psyr_3678: Psyr_3678 - adenosylcobinamide-phosphate synthase, at 4,364,433 to 4,365,341
_3678
Psyr_3679: Psyr_3679 - cob(II)yrinic acid a,c-diamide reductase, at 4,365,338 to 4,365,988
_3679
Psyr_3680: Psyr_3680 - hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase, at 4,365,985 to 4,367,280
_3680
Position (kb) 4365
4366 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4364.475 kb on + strand at 4364.578 kb on + strand, within Psyr_3678 at 4364.745 kb on - strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.831 kb on + strand, within Psyr_3678 at 4364.831 kb on + strand, within Psyr_3678 at 4365.366 kb on + strand at 4366.154 kb on + strand, within Psyr_3680 at 4366.154 kb on + strand, within Psyr_3680 at 4366.154 kb on + strand, within Psyr_3680 at 4366.154 kb on + strand, within Psyr_3680 at 4366.301 kb on + strand, within Psyr_3680 at 4366.302 kb on - strand, within Psyr_3680 at 4366.427 kb on + strand, within Psyr_3680 at 4366.428 kb on - strand, within Psyr_3680 at 4366.428 kb on - strand, within Psyr_3680 at 4366.817 kb on - strand, within Psyr_3680
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 4,364,475 + -2.1 4,364,578 + Psyr_3678 0.16 -0.2 4,364,745 - Psyr_3678 0.34 -0.2 4,364,746 + Psyr_3678 0.34 -1.7 4,364,746 + Psyr_3678 0.34 -1.7 4,364,746 + Psyr_3678 0.34 -2.0 4,364,746 + Psyr_3678 0.34 +1.3 4,364,746 + Psyr_3678 0.34 -0.7 4,364,746 + Psyr_3678 0.34 -1.0 4,364,746 + Psyr_3678 0.34 -0.2 4,364,747 - Psyr_3678 0.35 +0.8 4,364,747 - Psyr_3678 0.35 -1.5 4,364,747 - Psyr_3678 0.35 -0.9 4,364,747 - Psyr_3678 0.35 -1.2 4,364,747 - Psyr_3678 0.35 -0.3 4,364,747 - Psyr_3678 0.35 -1.2 4,364,747 - Psyr_3678 0.35 -0.2 4,364,747 - Psyr_3678 0.35 -1.2 4,364,747 - Psyr_3678 0.35 -2.7 4,364,747 - Psyr_3678 0.35 -3.1 4,364,747 - Psyr_3678 0.35 -1.7 4,364,831 + Psyr_3678 0.44 -0.9 4,364,831 + Psyr_3678 0.44 -2.5 4,365,366 + +0.0 4,366,154 + Psyr_3680 0.13 -0.2 4,366,154 + Psyr_3680 0.13 +0.9 4,366,154 + Psyr_3680 0.13 -1.8 4,366,154 + Psyr_3680 0.13 -0.2 4,366,301 + Psyr_3680 0.24 +3.3 4,366,302 - Psyr_3680 0.24 -2.9 4,366,427 + Psyr_3680 0.34 +1.3 4,366,428 - Psyr_3680 0.34 +1.3 4,366,428 - Psyr_3680 0.34 -0.6 4,366,817 - Psyr_3680 0.64 +0.8
Or see this region's nucleotide sequence