Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005850

Experiment: M9 with PEG 6000 16 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with PEG 6000 16 vol%
2,160,078	+		ABIE53_005848	0.42	-2.0
2,160,079	-		ABIE53_005848	0.42	-0.1
2,160,101	-		ABIE53_005848	0.45	-0.1
2,160,168	+		ABIE53_005848	0.53	+0.4
2,160,168	+		ABIE53_005848	0.53	+0.9
2,160,168	+		ABIE53_005848	0.53	+1.6
2,160,169	-		ABIE53_005848	0.53	-0.7
2,160,169	-		ABIE53_005848	0.53	-1.3
2,160,169	-		ABIE53_005848	0.53	-0.8
2,160,430	+		ABIE53_005848	0.86	+0.1
2,160,431	-		ABIE53_005848	0.86	-0.5
2,160,538	+				+0.6
2,160,539	-				-0.5
2,160,545	+				-0.9
2,160,545	+				+0.1
2,160,546	-				+0.9
2,160,562	+				-0.6
2,160,562	+				+0.4
2,160,563	-				-0.1
2,160,563	-				+0.1
2,160,611	+		ABIE53_005849	0.13	-1.3
2,160,617	+		ABIE53_005849	0.14	-0.8
2,160,617	+		ABIE53_005849	0.14	-0.4
2,160,617	+		ABIE53_005849	0.14	+0.4
2,160,618	-		ABIE53_005849	0.15	-2.7
2,160,618	-		ABIE53_005849	0.15	-1.3
2,160,845	+		ABIE53_005849	0.60	-0.9
2,160,846	-		ABIE53_005849	0.60	+0.2
2,160,846	-		ABIE53_005849	0.60	+0.9
2,160,846	-		ABIE53_005849	0.60	+0.1
2,160,912	-		ABIE53_005849	0.73	-0.2
2,160,992	+		ABIE53_005849	0.89	-0.1
2,161,016	+				+0.1
2,161,016	+				+1.4
2,161,049	+				-0.6
2,161,050	-				+1.4
2,161,256	+		ABIE53_005850	0.37	+0.2
2,161,257	-		ABIE53_005850	0.37	-0.4
2,161,366	+		ABIE53_005850	0.59	+0.4
2,161,375	-		ABIE53_005850	0.61	-1.3
2,161,375	-		ABIE53_005850	0.61	+0.4
2,161,375	-		ABIE53_005850	0.61	+0.1
2,161,430	+		ABIE53_005850	0.72	-0.2
2,161,431	-		ABIE53_005850	0.72	-1.0
2,161,565	+				-0.0
2,161,565	+				-0.3
2,161,566	-				-0.5
2,161,566	-				-0.4
2,161,566	-				-0.1
2,161,566	-				-0.3
2,161,566	-				-0.2
2,161,566	-				-0.2
2,161,692	+		ABIE53_005851	0.34	-0.9
2,161,693	-		ABIE53_005851	0.34	-0.2
2,161,751	+		ABIE53_005851	0.67	-0.3
2,161,752	-		ABIE53_005851	0.68	-0.3
2,161,752	-		ABIE53_005851	0.68	+0.4
2,161,752	-		ABIE53_005851	0.68	-0.5
2,161,765	+		ABIE53_005851	0.75	-0.4
2,161,765	+		ABIE53_005851	0.75	-0.4
2,161,766	-		ABIE53_005851	0.76	+0.4
2,161,809	-				-1.3
2,161,966	-		ABIE53_005852	0.12	+1.4
2,162,056	+		ABIE53_005852	0.22	-2.4
2,162,056	+		ABIE53_005852	0.22	+0.5
2,162,056	+		ABIE53_005852	0.22	-0.1
2,162,056	+		ABIE53_005852	0.22	-1.6
2,162,056	+		ABIE53_005852	0.22	-1.1
2,162,056	+		ABIE53_005852	0.22	-1.9
2,162,057	-		ABIE53_005852	0.22	-1.1
2,162,057	-		ABIE53_005852	0.22	+0.4
2,162,057	-		ABIE53_005852	0.22	+0.9
2,162,057	-		ABIE53_005852	0.22	-0.8
2,162,057	-		ABIE53_005852	0.22	+0.5
2,162,057	-		ABIE53_005852	0.22	-0.0
2,162,059	+		ABIE53_005852	0.22	-0.4
2,162,059	+		ABIE53_005852	0.22	-0.6
2,162,059	+		ABIE53_005852	0.22	+0.2
2,162,059	+		ABIE53_005852	0.22	+2.0
2,162,060	-		ABIE53_005852	0.22	-0.3
2,162,060	-		ABIE53_005852	0.22	-0.1
2,162,060	-		ABIE53_005852	0.22	-0.7
2,162,060	-		ABIE53_005852	0.22	-0.4
2,162,116	-		ABIE53_005852	0.29	+0.2
2,162,116	-		ABIE53_005852	0.29	+2.2
2,162,235	+		ABIE53_005852	0.42	-0.5
2,162,236	-		ABIE53_005852	0.42	+0.1
2,162,262	+		ABIE53_005852	0.45	-0.3
2,162,262	+		ABIE53_005852	0.45	-1.4
2,162,393	+		ABIE53_005852	0.60	-0.4
2,162,393	+		ABIE53_005852	0.60	-0.7
2,162,394	-		ABIE53_005852	0.60	+1.4
2,162,401	-		ABIE53_005852	0.61	-0.6
2,162,437	+		ABIE53_005852	0.65	-0.3
2,162,437	+		ABIE53_005852	0.65	+0.1