Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003611

Experiment: R2A with PEG 6000 16 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_003609 and ABIE53_003610 are separated by 27 nucleotidesABIE53_003610 and ABIE53_003611 are separated by 34 nucleotidesABIE53_003611 and ABIE53_003612 are separated by 1 nucleotides ABIE53_003609: ABIE53_003609 - cell division protein FtsA, at 4,053,383 to 4,054,615 _003609 ABIE53_003610: ABIE53_003610 - cell division protein FtsQ, at 4,054,643 to 4,055,395 _003610 ABIE53_003611: ABIE53_003611 - D-alanine-D-alanine ligase, at 4,055,430 to 4,056,371 _003611 ABIE53_003612: ABIE53_003612 - UDP-N-acetylmuramate--alanine ligase, at 4,056,373 to 4,057,776 _003612 Position (kb) 4055 4056 4057Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4054.616 kb on - strandat 4054.616 kb on - strandat 4054.616 kb on - strandat 4054.616 kb on - strandat 4054.616 kb on - strandat 4054.673 kb on - strandat 4054.673 kb on - strandat 4054.729 kb on - strand, within ABIE53_003610at 4054.939 kb on - strand, within ABIE53_003610at 4055.214 kb on - strand, within ABIE53_003610at 4055.214 kb on - strand, within ABIE53_003610at 4055.214 kb on - strand, within ABIE53_003610at 4055.310 kb on - strand, within ABIE53_003610

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with PEG 6000 16 vol%
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4,054,616 - -0.8
4,054,616 - -0.5
4,054,616 - -0.1
4,054,616 - -0.8
4,054,616 - +0.8
4,054,673 - +3.1
4,054,673 - +0.1
4,054,729 - ABIE53_003610 0.11 +0.5
4,054,939 - ABIE53_003610 0.39 +0.5
4,055,214 - ABIE53_003610 0.76 +0.5
4,055,214 - ABIE53_003610 0.76 +2.1
4,055,214 - ABIE53_003610 0.76 -2.6
4,055,310 - ABIE53_003610 0.89 -1.9

Or see this region's nucleotide sequence