Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000576

Experiment: M9 with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000575 and ABIE53_000576 are separated by 125 nucleotidesABIE53_000576 and ABIE53_000577 are separated by 6 nucleotides ABIE53_000575: ABIE53_000575 - putative alpha/beta hydrolase family esterase, at 625,613 to 626,215 _000575 ABIE53_000576: ABIE53_000576 - sulfate transport system substrate-binding protein, at 626,341 to 627,372 _000576 ABIE53_000577: ABIE53_000577 - biotin synthase, at 627,379 to 628,473 _000577 Position (kb) 626 627 628Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 625.435 kb on + strandat 625.435 kb on + strandat 625.436 kb on - strandat 625.436 kb on - strandat 625.436 kb on - strandat 625.453 kb on + strandat 625.454 kb on - strandat 625.880 kb on + strand, within ABIE53_000575at 625.880 kb on + strand, within ABIE53_000575at 625.881 kb on - strand, within ABIE53_000575at 626.129 kb on + strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.214 kb on - strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.263 kb on + strandat 626.264 kb on - strandat 626.264 kb on - strandat 626.320 kb on - strandat 626.420 kb on + strandat 626.462 kb on - strand, within ABIE53_000576at 626.462 kb on - strand, within ABIE53_000576at 626.468 kb on + strand, within ABIE53_000576at 626.468 kb on + strand, within ABIE53_000576at 626.469 kb on - strand, within ABIE53_000576at 626.469 kb on - strand, within ABIE53_000576at 626.482 kb on + strand, within ABIE53_000576at 626.482 kb on + strand, within ABIE53_000576at 626.483 kb on - strand, within ABIE53_000576at 626.483 kb on - strand, within ABIE53_000576at 626.483 kb on - strand, within ABIE53_000576at 626.515 kb on + strand, within ABIE53_000576at 626.515 kb on + strand, within ABIE53_000576at 626.516 kb on - strand, within ABIE53_000576at 626.516 kb on - strand, within ABIE53_000576at 626.516 kb on - strand, within ABIE53_000576at 626.516 kb on - strand, within ABIE53_000576at 626.517 kb on + strand, within ABIE53_000576at 626.517 kb on + strand, within ABIE53_000576at 626.517 kb on + strand, within ABIE53_000576at 626.517 kb on + strand, within ABIE53_000576at 626.518 kb on - strand, within ABIE53_000576at 626.518 kb on - strand, within ABIE53_000576at 626.518 kb on - strand, within ABIE53_000576at 626.588 kb on + strand, within ABIE53_000576at 626.713 kb on + strand, within ABIE53_000576at 626.839 kb on + strand, within ABIE53_000576at 626.840 kb on - strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.846 kb on - strand, within ABIE53_000576at 626.846 kb on - strand, within ABIE53_000576at 626.846 kb on - strand, within ABIE53_000576at 626.846 kb on - strand, within ABIE53_000576at 627.067 kb on + strand, within ABIE53_000576at 627.067 kb on + strand, within ABIE53_000576at 627.068 kb on - strand, within ABIE53_000576at 627.157 kb on + strand, within ABIE53_000576at 627.157 kb on + strand, within ABIE53_000576at 627.158 kb on - strand, within ABIE53_000576at 627.158 kb on - strand, within ABIE53_000576at 627.158 kb on - strand, within ABIE53_000576at 627.158 kb on - strand, within ABIE53_000576at 627.166 kb on + strand, within ABIE53_000576at 627.166 kb on + strand, within ABIE53_000576at 627.167 kb on - strand, within ABIE53_000576at 627.167 kb on - strand, within ABIE53_000576at 627.167 kb on - strand, within ABIE53_000576at 627.167 kb on - strand, within ABIE53_000576at 627.370 kb on + strandat 627.370 kb on + strandat 627.370 kb on + strandat 627.370 kb on + strandat 627.370 kb on + strandat 627.371 kb on - strandat 627.371 kb on - strandat 627.371 kb on - strandat 627.371 kb on - strandat 627.371 kb on - strandat 627.371 kb on - strandat 627.380 kb on + strandat 627.380 kb on + strandat 627.381 kb on - strandat 627.522 kb on - strand, within ABIE53_000577at 627.869 kb on + strand, within ABIE53_000577at 627.869 kb on + strand, within ABIE53_000577at 627.870 kb on - strand, within ABIE53_000577at 627.912 kb on + strand, within ABIE53_000577at 627.913 kb on - strand, within ABIE53_000577at 627.913 kb on - strand, within ABIE53_000577at 627.929 kb on + strand, within ABIE53_000577at 627.929 kb on + strand, within ABIE53_000577at 627.929 kb on + strand, within ABIE53_000577at 627.929 kb on + strand, within ABIE53_000577at 627.929 kb on + strand, within ABIE53_000577at 627.930 kb on - strand, within ABIE53_000577at 627.930 kb on - strand, within ABIE53_000577at 627.930 kb on - strand, within ABIE53_000577at 627.932 kb on + strand, within ABIE53_000577at 627.932 kb on + strand, within ABIE53_000577at 627.932 kb on + strand, within ABIE53_000577at 627.932 kb on + strand, within ABIE53_000577at 627.933 kb on - strand, within ABIE53_000577at 628.203 kb on - strand, within ABIE53_000577at 628.331 kb on + strand, within ABIE53_000577at 628.332 kb on - strand, within ABIE53_000577

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Chloride 200 mM
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625,435 + +1.0
625,435 + -0.6
625,436 - -0.5
625,436 - -0.7
625,436 - -0.7
625,453 + -1.3
625,454 - -0.4
625,880 + ABIE53_000575 0.44 +1.4
625,880 + ABIE53_000575 0.44 -1.8
625,881 - ABIE53_000575 0.44 +0.0
626,129 + ABIE53_000575 0.86 +0.1
626,130 - ABIE53_000575 0.86 -0.4
626,130 - ABIE53_000575 0.86 +1.3
626,130 - ABIE53_000575 0.86 +0.1
626,130 - ABIE53_000575 0.86 +1.3
626,130 - ABIE53_000575 0.86 -0.2
626,130 - ABIE53_000575 0.86 -0.3
626,214 - +2.4
626,261 + -1.8
626,261 + -0.6
626,261 + -0.3
626,261 + -1.3
626,261 + -1.0
626,261 + -0.5
626,261 + +0.6
626,262 - -0.6
626,262 - -0.1
626,262 - -0.6
626,262 - -1.1
626,262 - -0.4
626,262 - -0.4
626,263 + +0.6
626,264 - -0.3
626,264 - +0.4
626,320 - -1.0
626,420 + -0.3
626,462 - ABIE53_000576 0.12 -0.5
626,462 - ABIE53_000576 0.12 -0.0
626,468 + ABIE53_000576 0.12 -0.2
626,468 + ABIE53_000576 0.12 +0.6
626,469 - ABIE53_000576 0.12 -1.4
626,469 - ABIE53_000576 0.12 +0.0
626,482 + ABIE53_000576 0.14 -1.4
626,482 + ABIE53_000576 0.14 -0.8
626,483 - ABIE53_000576 0.14 -0.4
626,483 - ABIE53_000576 0.14 +0.5
626,483 - ABIE53_000576 0.14 +0.6
626,515 + ABIE53_000576 0.17 +0.9
626,515 + ABIE53_000576 0.17 +1.4
626,516 - ABIE53_000576 0.17 -1.8
626,516 - ABIE53_000576 0.17 -0.7
626,516 - ABIE53_000576 0.17 -2.8
626,516 - ABIE53_000576 0.17 -0.6
626,517 + ABIE53_000576 0.17 -3.3
626,517 + ABIE53_000576 0.17 -0.4
626,517 + ABIE53_000576 0.17 -0.7
626,517 + ABIE53_000576 0.17 -0.3
626,518 - ABIE53_000576 0.17 -1.8
626,518 - ABIE53_000576 0.17 +3.0
626,518 - ABIE53_000576 0.17 +0.3
626,588 + ABIE53_000576 0.24 +2.0
626,713 + ABIE53_000576 0.36 +0.3
626,839 + ABIE53_000576 0.48 +0.3
626,840 - ABIE53_000576 0.48 +1.0
626,845 + ABIE53_000576 0.49 -1.1
626,845 + ABIE53_000576 0.49 +1.2
626,845 + ABIE53_000576 0.49 -0.4
626,845 + ABIE53_000576 0.49 -1.0
626,845 + ABIE53_000576 0.49 -0.4
626,845 + ABIE53_000576 0.49 -0.4
626,846 - ABIE53_000576 0.49 +1.0
626,846 - ABIE53_000576 0.49 +0.7
626,846 - ABIE53_000576 0.49 -1.8
626,846 - ABIE53_000576 0.49 -0.4
627,067 + ABIE53_000576 0.70 -0.0
627,067 + ABIE53_000576 0.70 -1.4
627,068 - ABIE53_000576 0.70 +0.4
627,157 + ABIE53_000576 0.79 -1.7
627,157 + ABIE53_000576 0.79 -0.5
627,158 - ABIE53_000576 0.79 +0.4
627,158 - ABIE53_000576 0.79 +0.7
627,158 - ABIE53_000576 0.79 -0.3
627,158 - ABIE53_000576 0.79 +0.4
627,166 + ABIE53_000576 0.80 +0.0
627,166 + ABIE53_000576 0.80 -0.9
627,167 - ABIE53_000576 0.80 -0.0
627,167 - ABIE53_000576 0.80 -2.1
627,167 - ABIE53_000576 0.80 +0.4
627,167 - ABIE53_000576 0.80 -0.7
627,370 + +0.4
627,370 + +0.6
627,370 + -1.1
627,370 + -3.3
627,370 + -0.1
627,371 - -1.2
627,371 - -0.3
627,371 - -0.3
627,371 - -0.8
627,371 - -1.8
627,371 - -0.5
627,380 + -0.6
627,380 + +1.4
627,381 - +1.0
627,522 - ABIE53_000577 0.13 -3.6
627,869 + ABIE53_000577 0.45 -3.5
627,869 + ABIE53_000577 0.45 -3.5
627,870 - ABIE53_000577 0.45 -4.1
627,912 + ABIE53_000577 0.49 -3.2
627,913 - ABIE53_000577 0.49 -2.1
627,913 - ABIE53_000577 0.49 -3.5
627,929 + ABIE53_000577 0.50 -0.4
627,929 + ABIE53_000577 0.50 -0.7
627,929 + ABIE53_000577 0.50 +1.0
627,929 + ABIE53_000577 0.50 -1.0
627,929 + ABIE53_000577 0.50 -0.3
627,930 - ABIE53_000577 0.50 -0.6
627,930 - ABIE53_000577 0.50 -2.1
627,930 - ABIE53_000577 0.50 -1.2
627,932 + ABIE53_000577 0.51 -1.8
627,932 + ABIE53_000577 0.51 -1.1
627,932 + ABIE53_000577 0.51 -2.7
627,932 + ABIE53_000577 0.51 -0.6
627,933 - ABIE53_000577 0.51 -4.1
628,203 - ABIE53_000577 0.75 -3.8
628,331 + ABIE53_000577 0.87 -1.1
628,332 - ABIE53_000577 0.87 -4.1

Or see this region's nucleotide sequence