Experiment: M9 with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000497 and ABIE53_000498 are separated by 106 nucleotides ABIE53_000498 and ABIE53_000499 are separated by 473 nucleotides
ABIE53_000497: ABIE53_000497 - hypothetical protein, at 535,020 to 536,561
_000497
ABIE53_000498: ABIE53_000498 - hypothetical protein, at 536,668 to 537,081
_000498
ABIE53_000499: ABIE53_000499 - NAD-dependent SIR2 family protein deacetylase, at 537,555 to 538,091
_000499
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 535.707 kb on - strand, within ABIE53_000497 at 535.725 kb on + strand, within ABIE53_000497 at 535.725 kb on + strand, within ABIE53_000497 at 535.725 kb on + strand, within ABIE53_000497 at 535.889 kb on + strand, within ABIE53_000497 at 535.889 kb on + strand, within ABIE53_000497 at 535.889 kb on + strand, within ABIE53_000497 at 535.889 kb on + strand, within ABIE53_000497 at 535.889 kb on + strand, within ABIE53_000497 at 535.889 kb on + strand, within ABIE53_000497 at 535.890 kb on - strand, within ABIE53_000497 at 535.890 kb on - strand, within ABIE53_000497 at 535.890 kb on - strand, within ABIE53_000497 at 535.899 kb on + strand, within ABIE53_000497 at 535.919 kb on - strand, within ABIE53_000497 at 535.919 kb on - strand, within ABIE53_000497 at 536.015 kb on + strand, within ABIE53_000497 at 536.015 kb on + strand, within ABIE53_000497 at 536.015 kb on + strand, within ABIE53_000497 at 536.016 kb on - strand, within ABIE53_000497 at 536.031 kb on + strand, within ABIE53_000497 at 536.032 kb on - strand, within ABIE53_000497 at 536.032 kb on - strand, within ABIE53_000497 at 536.040 kb on + strand, within ABIE53_000497 at 536.058 kb on - strand, within ABIE53_000497 at 536.116 kb on - strand, within ABIE53_000497 at 536.145 kb on + strand, within ABIE53_000497 at 536.145 kb on + strand, within ABIE53_000497 at 536.145 kb on + strand, within ABIE53_000497 at 536.146 kb on - strand, within ABIE53_000497 at 536.177 kb on + strand, within ABIE53_000497 at 536.177 kb on + strand, within ABIE53_000497 at 536.177 kb on + strand, within ABIE53_000497 at 536.178 kb on - strand, within ABIE53_000497 at 536.178 kb on - strand, within ABIE53_000497 at 536.178 kb on - strand, within ABIE53_000497 at 536.178 kb on - strand, within ABIE53_000497 at 536.178 kb on - strand, within ABIE53_000497 at 536.178 kb on - strand, within ABIE53_000497 at 536.178 kb on - strand, within ABIE53_000497 at 536.213 kb on - strand, within ABIE53_000497 at 536.238 kb on + strand, within ABIE53_000497 at 536.238 kb on + strand, within ABIE53_000497 at 536.238 kb on + strand, within ABIE53_000497 at 536.238 kb on + strand, within ABIE53_000497 at 536.238 kb on + strand, within ABIE53_000497 at 536.238 kb on + strand, within ABIE53_000497 at 536.238 kb on + strand, within ABIE53_000497 at 536.239 kb on - strand, within ABIE53_000497 at 536.239 kb on - strand, within ABIE53_000497 at 536.239 kb on - strand, within ABIE53_000497 at 536.239 kb on - strand, within ABIE53_000497 at 536.250 kb on - strand, within ABIE53_000497 at 536.306 kb on + strand, within ABIE53_000497 at 536.306 kb on + strand, within ABIE53_000497 at 536.306 kb on + strand, within ABIE53_000497 at 536.307 kb on - strand, within ABIE53_000497 at 536.307 kb on - strand, within ABIE53_000497 at 536.347 kb on + strand, within ABIE53_000497 at 536.347 kb on + strand, within ABIE53_000497 at 536.348 kb on - strand, within ABIE53_000497 at 536.532 kb on + strand at 536.611 kb on - strand at 536.611 kb on - strand at 536.689 kb on - strand at 536.689 kb on - strand at 536.689 kb on - strand at 536.882 kb on - strand, within ABIE53_000498 at 536.882 kb on - strand, within ABIE53_000498 at 536.896 kb on + strand, within ABIE53_000498 at 536.896 kb on + strand, within ABIE53_000498 at 536.896 kb on + strand, within ABIE53_000498 at 536.897 kb on - strand, within ABIE53_000498 at 536.897 kb on - strand, within ABIE53_000498 at 536.897 kb on - strand, within ABIE53_000498 at 536.897 kb on - strand, within ABIE53_000498 at 536.897 kb on - strand, within ABIE53_000498 at 536.897 kb on - strand, within ABIE53_000498 at 536.898 kb on + strand, within ABIE53_000498 at 536.899 kb on - strand, within ABIE53_000498 at 536.899 kb on - strand, within ABIE53_000498 at 536.899 kb on - strand, within ABIE53_000498 at 536.911 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.988 kb on + strand, within ABIE53_000498 at 536.989 kb on - strand, within ABIE53_000498 at 536.989 kb on - strand, within ABIE53_000498 at 536.989 kb on - strand, within ABIE53_000498 at 536.989 kb on - strand, within ABIE53_000498 at 536.989 kb on - strand, within ABIE53_000498 at 536.989 kb on - strand, within ABIE53_000498 at 536.989 kb on - strand, within ABIE53_000498 at 536.989 kb on - strand, within ABIE53_000498 at 537.016 kb on + strand, within ABIE53_000498 at 537.016 kb on + strand, within ABIE53_000498 at 537.017 kb on - strand, within ABIE53_000498 at 537.079 kb on + strand at 537.079 kb on + strand at 537.080 kb on - strand at 537.080 kb on - strand at 537.080 kb on - strand at 537.080 kb on - strand at 537.082 kb on + strand at 537.082 kb on + strand at 537.272 kb on - strand at 537.399 kb on + strand at 537.399 kb on + strand at 537.400 kb on - strand at 537.639 kb on + strand, within ABIE53_000499 at 537.881 kb on + strand, within ABIE53_000499 at 537.881 kb on + strand, within ABIE53_000499 at 537.881 kb on + strand, within ABIE53_000499 at 537.881 kb on + strand, within ABIE53_000499 at 537.881 kb on + strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Chloride 200 mM remove 535,707 - ABIE53_000497 0.45 +0.5 535,725 + ABIE53_000497 0.46 -0.5 535,725 + ABIE53_000497 0.46 -2.6 535,725 + ABIE53_000497 0.46 -2.0 535,889 + ABIE53_000497 0.56 +0.8 535,889 + ABIE53_000497 0.56 +0.2 535,889 + ABIE53_000497 0.56 -0.5 535,889 + ABIE53_000497 0.56 +1.4 535,889 + ABIE53_000497 0.56 -0.0 535,889 + ABIE53_000497 0.56 +0.7 535,890 - ABIE53_000497 0.56 -0.8 535,890 - ABIE53_000497 0.56 +0.2 535,890 - ABIE53_000497 0.56 -2.1 535,899 + ABIE53_000497 0.57 -0.5 535,919 - ABIE53_000497 0.58 +0.0 535,919 - ABIE53_000497 0.58 -0.7 536,015 + ABIE53_000497 0.65 +4.0 536,015 + ABIE53_000497 0.65 -0.6 536,015 + ABIE53_000497 0.65 -0.3 536,016 - ABIE53_000497 0.65 +0.5 536,031 + ABIE53_000497 0.66 +0.3 536,032 - ABIE53_000497 0.66 -0.0 536,032 - ABIE53_000497 0.66 -0.8 536,040 + ABIE53_000497 0.66 -1.5 536,058 - ABIE53_000497 0.67 -0.9 536,116 - ABIE53_000497 0.71 -0.0 536,145 + ABIE53_000497 0.73 -1.7 536,145 + ABIE53_000497 0.73 +0.8 536,145 + ABIE53_000497 0.73 +0.4 536,146 - ABIE53_000497 0.73 +0.2 536,177 + ABIE53_000497 0.75 -0.5 536,177 + ABIE53_000497 0.75 -0.7 536,177 + ABIE53_000497 0.75 +1.8 536,178 - ABIE53_000497 0.75 -0.5 536,178 - ABIE53_000497 0.75 -0.0 536,178 - ABIE53_000497 0.75 -2.2 536,178 - ABIE53_000497 0.75 -1.7 536,178 - ABIE53_000497 0.75 -0.5 536,178 - ABIE53_000497 0.75 -1.1 536,178 - ABIE53_000497 0.75 +0.1 536,213 - ABIE53_000497 0.77 +0.5 536,238 + ABIE53_000497 0.79 -0.4 536,238 + ABIE53_000497 0.79 +1.7 536,238 + ABIE53_000497 0.79 -0.8 536,238 + ABIE53_000497 0.79 -0.7 536,238 + ABIE53_000497 0.79 -0.8 536,238 + ABIE53_000497 0.79 -0.7 536,238 + ABIE53_000497 0.79 -0.6 536,239 - ABIE53_000497 0.79 -1.9 536,239 - ABIE53_000497 0.79 -1.1 536,239 - ABIE53_000497 0.79 -0.9 536,239 - ABIE53_000497 0.79 -1.0 536,250 - ABIE53_000497 0.80 -0.6 536,306 + ABIE53_000497 0.83 +0.4 536,306 + ABIE53_000497 0.83 +2.0 536,306 + ABIE53_000497 0.83 -0.3 536,307 - ABIE53_000497 0.83 -1.3 536,307 - ABIE53_000497 0.83 +0.2 536,347 + ABIE53_000497 0.86 -1.5 536,347 + ABIE53_000497 0.86 -0.4 536,348 - ABIE53_000497 0.86 +0.9 536,532 + -0.9 536,611 - -1.6 536,611 - -0.3 536,689 - -1.5 536,689 - -1.7 536,689 - -1.1 536,882 - ABIE53_000498 0.52 +1.0 536,882 - ABIE53_000498 0.52 +0.7 536,896 + ABIE53_000498 0.55 +0.0 536,896 + ABIE53_000498 0.55 +2.0 536,896 + ABIE53_000498 0.55 -0.3 536,897 - ABIE53_000498 0.55 -0.3 536,897 - ABIE53_000498 0.55 +0.2 536,897 - ABIE53_000498 0.55 -0.5 536,897 - ABIE53_000498 0.55 +1.4 536,897 - ABIE53_000498 0.55 -1.3 536,897 - ABIE53_000498 0.55 -1.1 536,898 + ABIE53_000498 0.56 +0.7 536,899 - ABIE53_000498 0.56 +0.4 536,899 - ABIE53_000498 0.56 -0.3 536,899 - ABIE53_000498 0.56 -1.3 536,911 + ABIE53_000498 0.59 -0.9 536,988 + ABIE53_000498 0.77 +1.4 536,988 + ABIE53_000498 0.77 -0.0 536,988 + ABIE53_000498 0.77 +1.4 536,988 + ABIE53_000498 0.77 -0.3 536,988 + ABIE53_000498 0.77 -0.8 536,988 + ABIE53_000498 0.77 -1.0 536,988 + ABIE53_000498 0.77 +1.0 536,988 + ABIE53_000498 0.77 -1.1 536,988 + ABIE53_000498 0.77 -1.2 536,988 + ABIE53_000498 0.77 +0.9 536,988 + ABIE53_000498 0.77 -0.2 536,988 + ABIE53_000498 0.77 +0.5 536,988 + ABIE53_000498 0.77 +0.4 536,988 + ABIE53_000498 0.77 +2.0 536,989 - ABIE53_000498 0.78 +1.0 536,989 - ABIE53_000498 0.78 -1.6 536,989 - ABIE53_000498 0.78 -0.2 536,989 - ABIE53_000498 0.78 -0.8 536,989 - ABIE53_000498 0.78 -0.2 536,989 - ABIE53_000498 0.78 +0.7 536,989 - ABIE53_000498 0.78 +0.1 536,989 - ABIE53_000498 0.78 +0.7 537,016 + ABIE53_000498 0.84 -0.6 537,016 + ABIE53_000498 0.84 -1.0 537,017 - ABIE53_000498 0.84 -0.4 537,079 + -1.8 537,079 + -1.2 537,080 - +2.0 537,080 - +2.0 537,080 - +3.0 537,080 - -0.8 537,082 + -0.7 537,082 + +3.0 537,272 - +1.8 537,399 + -1.4 537,399 + -0.7 537,400 - -1.5 537,639 + ABIE53_000499 0.16 -1.5 537,881 + ABIE53_000499 0.61 -0.3 537,881 + ABIE53_000499 0.61 -0.5 537,881 + ABIE53_000499 0.61 -1.0 537,881 + ABIE53_000499 0.61 -0.8 537,881 + ABIE53_000499 0.61 -1.4 537,882 - ABIE53_000499 0.61 -1.9 537,882 - ABIE53_000499 0.61 -2.1 537,882 - ABIE53_000499 0.61 -0.1 537,882 - ABIE53_000499 0.61 +0.7 537,882 - ABIE53_000499 0.61 -0.3 537,882 - ABIE53_000499 0.61 -1.8 537,882 - ABIE53_000499 0.61 -1.6 537,882 - ABIE53_000499 0.61 -2.3
Or see this region's nucleotide sequence